Pakket: bedtools (2.31.1+dfsg-2 en anderen)

[ Bron: bedtools  ]

suite of utilities for comparing genomic features

The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. Using BEDTools, one can develop sophisticated pipelines that answer complicated research questions by streaming several BEDTools together.

The groupBy utility is distributed in the filo package.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, interface::commandline, Role: Program, Scope: Suite, Purpose: use::analysing, use::comparing, Data Conversion, use::filtering, works-with::biological-sequence

Andere aan bedtools gerelateerde pakketten

• dep: libbz2-1.0 [niet sparc64]

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.23) [sparc64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.34) [niet alpha, arm64, ia64, sh4, sparc64]

  dep: libc6 (>= 2.37) [sh4]

  dep: libc6 (>= 2.38) [arm64]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [amd64, s390x, x32]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [alpha]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [arm64, ia64, mips64el, ppc64, ppc64el, riscv64, sh4]

  dep: libgcc-s1 (>= 7) [i386]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support bibliotheek

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libgcc1 (>= 1:3.4) [sparc64]

  Pakket niet beschikbaar

• dep: liblzma5 (>= 5.1.1alpha+20120614) [niet sparc64]

  XZ-format compression library

• dep: libstdc++6 (>= 13.1) [niet sparc64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 5.2) [sparc64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: zlib1g (>= 1:1.1.4) [niet sparc64]

  compressiebibliotheek - programma's

  dep: zlib1g (>= 1:1.2.3.3) [sparc64]

bedtools downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	2.31.1+dfsg-2	608,1 kB	2.458,0 kB	[overzicht]
amd64	2.31.1+dfsg-2	661,8 kB	2.106,0 kB	[overzicht]
arm64	2.31.1+dfsg-2+b1	586,6 kB	2.007,0 kB	[overzicht]
armel	2.31.1+dfsg-2	547,2 kB	1.817,0 kB	[overzicht]
armhf	2.31.1+dfsg-2	564,5 kB	1.313,0 kB	[overzicht]
hppa (unofficial port)	2.31.1+dfsg-2	621,0 kB	1.976,0 kB	[overzicht]
i386	2.31.1+dfsg-2	727,9 kB	2.301,0 kB	[overzicht]
ia64 (unofficial port)	2.31.1+dfsg-2	796,8 kB	4.272,0 kB	[overzicht]
m68k (unofficial port)	2.31.1+dfsg-2	623,5 kB	2.045,0 kB	[overzicht]
mips64el	2.31.1+dfsg-2	582,9 kB	2.599,0 kB	[overzicht]
ppc64 (unofficial port)	2.31.1+dfsg-2	658,7 kB	2.710,0 kB	[overzicht]
ppc64el	2.31.1+dfsg-2	664,1 kB	2.518,0 kB	[overzicht]
riscv64	2.31.1+dfsg-2+b2	644,0 kB	1.603,0 kB	[overzicht]
s390x	2.31.1+dfsg-2	646,6 kB	2.162,0 kB	[overzicht]
sh4 (unofficial port)	2.31.1+dfsg-2	752,8 kB	1.942,0 kB	[overzicht]
sparc64 (unofficial port)	2.26.0+dfsg-5	460,9 kB	1.898,0 kB	[overzicht]
x32 (unofficial port)	2.31.1+dfsg-2	665,9 kB	2.001,0 kB	[overzicht]