Package: r-bioc-edger (4.2.1+dfsg-1 and others)

[ Source: r-bioc-edger  ]

Empirical analysis of digital gene expression data in R

Bioconductor package for differential expression analysis of whole transcriptome sequencing (RNA-seq) and digital gene expression profiles with biological replication. It uses empirical Bayes estimation and exact tests based on the negative binomial distribution. It is also useful for differential signal analysis with other types of genome-scale count data.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::r, interface::commandline, Role: Program

Other Packages Related to r-bioc-edger

• dep: libblas3

  Basic Linear Algebra Reference implementations, shared library

  or libblas.so.3

  virtual package provided by libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.27) [riscv64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.29) [not alpha, ia64, riscv64, sh4]

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [not hppa, ia64, m68k, sh4]

  GCC support library

  dep: libgcc-s1 (>= 3.3.4) [sh4]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libgfortran5 (>= 8) [sparc64]

  Runtime library for GNU Fortran applications

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

  or liblapack.so.3

  virtual package provided by libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libstdc++6 (>= 13.1) [hppa, ia64, m68k, sh4, x32]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 14) [not hppa, ia64, m68k, sh4, x32]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: r-api-4.0

  virtual package provided by r-base-core

• dep: r-api-bioc-3.18 [hppa, ia64, m68k, sh4, x32]

  Package not available

• dep: r-api-bioc-3.19 [not hppa, ia64, m68k, sh4, x32]

  virtual package provided by r-bioc-biocgenerics

• dep: r-bioc-limma (>= 3.41.5) [hppa, ia64, m68k, sh4, x32]

  linear models for microarray data

  dep: r-bioc-limma (>= 3.60.3) [not hppa, ia64, m68k, sh4, x32]

• dep: r-cran-locfit

  GNU R local regression, likelihood and density estimation

• dep: r-cran-rcpp

  GNU R package for Seamless R and C++ Integration

• sug: r-bioc-annotationdbi [hppa, ia64, m68k, sh4, x32]

  GNU R Annotation Database Interface for BioConductor

  sug: r-bioc-annotationdbi (>= 1.66.0) [not hppa, ia64, m68k, sh4, x32]

• sug: r-bioc-biobase [hppa, ia64, m68k, sh4, x32]

  base functions for Bioconductor

  sug: r-bioc-biobase (>= 2.64.0) [not hppa, ia64, m68k, sh4, x32]

• sug: r-bioc-biocstyle [hppa, ia64, m68k, sh4, x32]

  standard styles for vignettes and other Bioconductor documents

  sug: r-bioc-biocstyle (>= 2.32.1) [not hppa, ia64, m68k, sh4, x32]

• sug: r-bioc-org.hs.eg.db [hppa, ia64, m68k, sh4, x32]

  genome-wide annotation for Human

  sug: r-bioc-org.hs.eg.db (>= 3.19.1) [not hppa, ia64, m68k, sh4, x32]

• sug: r-bioc-rhdf5 [hppa, ia64, m68k, sh4, x32]

  BioConductor HDF5 interface to R

  sug: r-bioc-rhdf5 (>= 2.48.0) [not hppa, ia64, m68k, sh4, x32]

• sug: r-bioc-summarizedexperiment [hppa, ia64, m68k, sh4, x32]

  BioConductor assay container

  sug: r-bioc-summarizedexperiment (>= 1.34.0) [not hppa, ia64, m68k, sh4, x32]

• sug: r-cran-jsonlite

  Robust, High Performance JSON Parser and Generator for R

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-matrix

  GNU R package of classes for dense and sparse matrices

• sug: r-cran-readr

  GNU R package to read rectangular text data

• sug: r-cran-seuratobject

  GNU R data structures for single cell data

Download r-bioc-edger

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	4.2.1+dfsg-1	1,140.3 kB	1,588.0 kB	[list of files]
amd64	4.2.1+dfsg-1	1,154.0 kB	1,520.0 kB	[list of files]
arm64	4.2.1+dfsg-1	1,137.3 kB	1,524.0 kB	[list of files]
hppa (unofficial port)	4.0.16+dfsg-1	1,113.3 kB	1,522.0 kB	[list of files]
ia64 (unofficial port)	4.0.16+dfsg-1	1,136.4 kB	1,806.0 kB	[list of files]
m68k (unofficial port)	4.0.16+dfsg-1	1,100.6 kB	1,432.0 kB	[list of files]
mips64el	4.2.1+dfsg-1	1,131.8 kB	1,625.0 kB	[list of files]
ppc64 (unofficial port)	4.2.1+dfsg-1	1,155.3 kB	1,655.0 kB	[list of files]
ppc64el	4.2.1+dfsg-1	1,152.4 kB	1,588.0 kB	[list of files]
riscv64	4.2.1+dfsg-1	1,152.8 kB	1,459.0 kB	[list of files]
s390x	4.2.1+dfsg-1	1,152.8 kB	1,524.0 kB	[list of files]
sh4 (unofficial port)	4.0.16+dfsg-1	1,129.7 kB	1,493.0 kB	[list of files]
sparc64 (unofficial port)	4.2.1+dfsg-1	1,127.0 kB	2,234.0 kB	[list of files]
x32 (unofficial port)	4.0.16+dfsg-1	1,119.8 kB	1,451.0 kB	[list of files]