Package: freebayes (1.3.7-1 and others)

[ Source: freebayes  ]

Bayesian haplotype-based polymorphism discovery and genotyping

FreeBayes is a Bayesian genetic variant detector designed to find small polymorphisms, specifically SNPs (single-nucleotide polymorphisms), indels (insertions and deletions), MNPs (multi-nucleotide polymorphisms), and complex events (composite insertion and substitution events) smaller than the length of a short-read sequencing alignment.

Other Packages Related to freebayes

• dep: libc6 (>= 2.34) [not alpha, ia64, sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [amd64]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [alpha, sparc64]

  dep: libgcc-s1 (>= 4.2) [ia64, ppc64, ppc64el, sh4]

  dep: libgcc-s1 (>= 4.5) [arm64, mips64el, riscv64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libseqlib2 (>= 1.2.0) [amd64]

  C++ htslib/bwa-mem/fermi interface for interrogating sequence data

  dep: libseqlib2 (>= 1.2.0+dfsg) [not amd64]

• dep: libstdc++6 (>= 13.1) [not alpha]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 13.2.0-2) [alpha]

• dep: libtabixpp0 (>= 1.0.0)

  C++ wrapper to tabix indexer

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: libvcflib1 (>= 1.0.3+dfsg) [ia64, m68k, ppc64, sh4, sparc64]

  C++ library for parsing and manipulating VCF files

• dep: libvcflib2 (>= 1.0.9+dfsg1) [not ia64, m68k, ppc64, sh4, sparc64]

  C++ library for parsing and manipulating VCF files

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

• rec: parallel

  build and execute command lines from standard input in parallel

Download freebayes

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.3.7-1	1,451.7 kB	4,308.0 kB	[list of files]
amd64	1.3.7-1	1,452.7 kB	4,024.0 kB	[list of files]
arm64	1.3.7-1	1,397.0 kB	3,919.0 kB	[list of files]
ia64 (unofficial port)	1.3.6-2+b1	1,561.5 kB	5,564.0 kB	[list of files]
m68k (unofficial port)	1.3.6-2+b1	1,396.9 kB	3,912.0 kB	[list of files]
mips64el	1.3.7-1	1,428.4 kB	4,375.0 kB	[list of files]
ppc64 (unofficial port)	1.3.6-2+b1	1,458.5 kB	4,480.0 kB	[list of files]
ppc64el	1.3.7-1	1,473.4 kB	4,304.0 kB	[list of files]
riscv64	1.3.7-1+b1	1,459.7 kB	3,736.0 kB	[list of files]
sh4 (unofficial port)	1.3.6-2+b1	1,531.0 kB	3,898.0 kB	[list of files]
sparc64 (unofficial port)	1.3.6-2+b1	1,354.8 kB	4,621.0 kB	[list of files]