Package: libvcflib1 (1.0.9+dfsg-1 and others) [debports]

[ Source:  ]

C++ library for parsing and manipulating VCF files

The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors.

vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both:

 * an API for parsing and operating on records of genomic variation as it can
   be described by the VCF format,
 * and a collection of command-line utilities for executing complex
   manipulations on VCF files.

Other Packages Related to libvcflib1

• dep: libc6 (>= 2.29) [not ia64, riscv64, sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.33) [riscv64]

  dep: libc6 (>= 2.35) [sh4]

• dep: libc6.1 (>= 2.35) [ia64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

• dep: libdisorder0 (>= 0.0.2)

  library for entropy measurement of byte streams

• dep: libfastahack0 (>= 0.0+git20160702.bbc645f) [ia64, sparc64]

  library for indexing and sequence extraction from FASTA files (lib)

  dep: libfastahack0 (>= 1.0.0+dfsg) [not ia64, sparc64]

• dep: libgcc-s1 (>= 3.0) [ppc64, x32]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [riscv64, sh4, sparc64]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgomp1 (>= 4.2.1) [sparc64]

  GCC OpenMP (GOMP) support library

• dep: libsmithwaterman0 (>= 0.0+git20160702.2610e25)

  determine similar regions between two strings or genomic sequences (lib)

• dep: libssw0 (>= 1.1) [sparc64]

  fast SIMD parallelized implementation of the Smith-Waterman algorithm

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• dep: libtabixpp0 (>= 1.0.0)

  C++ wrapper to tabix indexer

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: libwfa2-0 (>= 2.3.2) [riscv64]

  exact gap-affine algorithm (shared library)

Download libvcflib1

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
ia64 (unofficial port)	1.0.3+dfsg-2	181.3 kB	833.0 kB	[list of files]
m68k (unofficial port)	1.0.3+dfsg-2	137.1 kB	405.0 kB	[list of files]
ppc64 (unofficial port)	1.0.3+dfsg-2	153.0 kB	533.0 kB	[list of files]
riscv64 (unofficial port)	1.0.9+dfsg-1	167.7 kB	377.0 kB	[list of files]
sh4 (unofficial port)	1.0.3+dfsg-2	167.4 kB	406.0 kB	[list of files]
sparc64 (unofficial port)	1.0.3+dfsg-2	123.4 kB	1,057.0 kB	[list of files]
x32 (unofficial port)	1.0.3+dfsg-2	149.7 kB	397.0 kB	[list of files]