Package: libvcflib2 (1.0.9+dfsg1-3 and others)

[ Source: libvcflib  ]

C++ library for parsing and manipulating VCF files

The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors.

vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both:

 * an API for parsing and operating on records of genomic variation as it can
   be described by the VCF format,
 * and a collection of command-line utilities for executing complex
   manipulations on VCF files.

Other Packages Related to libvcflib2

• dep: libc6 (>= 2.38) [not alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libc6.1 (>= 2.33) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

• dep: libdisorder0 (>= 0.0.2)

  library for entropy measurement of byte streams

• dep: libfastahack0 (>= 0.0+git20160702.bbc645f) [not alpha, riscv64]

  library for indexing and sequence extraction from FASTA files (lib)

  dep: libfastahack0 (>= 1.0.0+dfsg) [alpha, riscv64]

• dep: libgcc-s1 (>= 3.3.1) [not alpha]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [alpha]

• dep: libsmithwaterman0 (>= 0.0+git20160702.2610e25)

  determine similar regions between two strings or genomic sequences (lib)

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: libtabixpp0 (>= 1.0.0) [alpha]

  C++ wrapper to tabix indexer

• dep: libtabixpp0t64 (>= 1.0.0) [not alpha]

  C++ wrapper to tabix indexer

• dep: libwfa2-0 (>= 2.3.3)

  exact gap-affine algorithm (shared library)

Download libvcflib2

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.0.9+dfsg1-3	173.1 kB	601.0 kB	[list of files]
amd64	1.0.9+dfsg1-3+b2	189.0 kB	519.0 kB	[list of files]
arm64	1.0.9+dfsg1-3+b2	160.9 kB	471.0 kB	[list of files]
mips64el	1.0.9+dfsg1-3+b2	166.1 kB	556.0 kB	[list of files]
ppc64el	1.0.9+dfsg1-3+b2	185.2 kB	599.0 kB	[list of files]
riscv64	1.0.9+dfsg1-3+b2	178.2 kB	379.0 kB	[list of files]