Package: canu (2.0+dfsg-2 and others)

[ Source: canu  ]

single molecule sequence assembler for genomes

Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION).

Canu is a hierarchical assembly pipeline which runs in four steps:

 * Detect overlaps in high-noise sequences using MHAP
 * Generate corrected sequence consensus
 * Trim corrected sequences
 * Assemble trimmed corrected sequences

Other Packages Related to canu

• dep: gnuplot

  Command-line driven interactive plotting program.
  also a virtual package provided by gnuplot-nox, gnuplot-qt, gnuplot-x11

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libfilesys-df-perl

  Module to obtain filesystem disk space information

• dep: libgcc-s1 (>= 3.0) [not armel, armhf, i386, mipsel]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• dep: mhap

  locality-sensitive hashing to detect long-read overlaps

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• sug: nanopolish

  consensus caller for nanopore sequencing data

• sug: pbgenomicconsensus

  Package not available

Download canu

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	2.0+dfsg-2+b1	1,182.4 kB	8,799.0 kB	[list of files]
arm64	2.0+dfsg-2+b1	1,077.8 kB	9,886.0 kB	[list of files]
armel	2.0+dfsg-2+b1	1,027.4 kB	9,663.0 kB	[list of files]
armhf	2.0+dfsg-2+b1	1,041.9 kB	7,955.0 kB	[list of files]
i386	2.0+dfsg-2+b1	1,317.8 kB	10,030.0 kB	[list of files]
mips64el	2.0+dfsg-2+b1	1,297.2 kB	12,589.0 kB	[list of files]
mipsel	2.0+dfsg-2+b1	1,351.8 kB	12,568.0 kB	[list of files]
ppc64el	2.0+dfsg-2+b1	1,204.7 kB	12,855.0 kB	[list of files]
s390x	2.0+dfsg-2+b1	1,073.5 kB	8,954.0 kB	[list of files]