Package: spaln (3.0.2+dfsg-2 and others)

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Opdelingsparat transkript-sammenligning til genomisk DNA

Spaln (space-efficient spliced alignment) er et uafhængigt program, der kortlægger og sammenligner et sæt af cDNA- eller proteinsekvenser til en hel genomisk sekvens i et enkelt job. Udfører også opdelt eller ordinær sammenligning efter hurtig lighedssøgning mod en proteinsekvensdatabase, hvis et genomisk segment eller en amino-syresekvens er angivet i en forespørgsel.

Spaln understøtter en kombination af proteinsekvensdatabase og et angivet genomisk segment og udfører hurtige lighedssøgninger og (semi-)global sammenligning af et sæt af proteinsekvensforespørgsler mod en proteinsekvensdatabase. Spaln adopterer flerfase heuristik, der gør det muligt at udføre jobbet på en konventionel personlig computer.

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Download spaln

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	3.0.2+dfsg-2+b1	527.8 kB	2,363.0 kB	[list of files]
amd64	3.0.2+dfsg-2+b1	567.9 kB	1,945.0 kB	[list of files]
arm64	3.0.2+dfsg-2+b1	510.3 kB	2,231.0 kB	[list of files]
hppa (unofficial port)	2.4.7+dfsg-1	330.7 kB	799.0 kB	[list of files]
ia64 (unofficial port)	3.0.2+dfsg-2	679.9 kB	3,602.0 kB	[list of files]
m68k (unofficial port)	2.4.7+dfsg-1	306.2 kB	811.0 kB	[list of files]
mips64el	3.0.2+dfsg-2+b1	541.2 kB	2,360.0 kB	[list of files]
ppc64 (unofficial port)	3.0.2+dfsg-2+b1	566.1 kB	2,819.0 kB	[list of files]
ppc64el	3.0.2+dfsg-2+b1	573.3 kB	2,616.0 kB	[list of files]
riscv64	3.0.2+dfsg-2+b1	656.4 kB	3,350.0 kB	[list of files]
s390x	3.0.2+dfsg-2+b1	582.8 kB	2,061.0 kB	[list of files]
sh4 (unofficial port)	2.4.7+dfsg-1	373.7 kB	713.0 kB	[list of files]
sparc64 (unofficial port)	3.0.2+dfsg-2+b1	513.1 kB	14,484.0 kB	[list of files]
x32 (unofficial port)	2.4.7+dfsg-1	337.2 kB	813.0 kB	[list of files]