Package: sga (0.10.15-7 and others)

[ Source: sga  ]

De novo-genomsamler som bruger strenggrafer

Hovedformålet med SGA er at være meget hukommelseseffektivt, hvilket opnås ved at bruge en komprimeret repræsentation af DNA-sekvenslæsninger.

SGA er en novo-samler for DNS-sekvenslæsninger. Programmet er baseret på Gene Myers' strenggrafformulation af samling og bruger FM-index/Burrows-Wheeler-transform til effektivt at finde overlapninger mellem sekvenslæsninger.

Other Packages Related to sga

• dep: libbamtools2.4.0 [hppa, ppc64, sparc64]

  Package not available

• dep: libbamtools2.5.1 [sh4]

  Package not available

• dep: libbamtools2.5.2 (>= 2.5.2+dfsg) [not hppa, ppc64, sh4, sparc64]

  Dynamisk bibliotek til at manipulere BAM-filer (genomsammenligning)

• dep: libc6 (>= 2.23) [hppa, ppc64, sparc64]

  GNU C-bibliotek: Delte biblioteker
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.27) [sh4]

  dep: libc6 (>= 2.34) [amd64, arm64, armel, m68k, mips64el, ppc64el, x32]

  dep: libc6 (>= 2.36) [loong64]

  dep: libc6 (>= 2.38) [armhf, i386, riscv64]

• dep: libc6.1 (>= 2.33) [ia64]

  GNU C-bibliotek: Delte biblioteker
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.34) [alpha]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, loong64, mips64el, ppc64el, x32]

  GCC støttebibliotek

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

  dep: libgcc-s1 (>= 7) [i386]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC støttebibliotek

• dep: libgcc1 (>= 1:3.0) [ppc64]

  Package not available

  dep: libgcc1 (>= 1:3.4) [sh4, sparc64]

• dep: libgcc4 (>= 4.1.1) [hppa]

  Package not available

• dep: libgomp1 (>= 4.9) [hppa, ppc64, sh4, sparc64]

  GCC OpenMP-understøttelsesbibliotek (GOMP)

  dep: libgomp1 (>= 6) [not hppa, ppc64, sh4, sparc64]

• dep: libstdc++6 (>= 11) [amd64, arm64, armel, ia64, m68k, mips64el, ppc64el, x32]

  GNU Standard C++ bibliotek v3

  dep: libstdc++6 (>= 13.1) [alpha, loong64]

  dep: libstdc++6 (>= 14) [armhf, i386, riscv64]

  dep: libstdc++6 (>= 5.2) [hppa, ppc64, sh4, sparc64]

• dep: libunwind8 [ia64]

  Bibliotek til at bestemme call-chain for et program - kørselstid

• dep: perl [not hppa, ppc64, sh4, sparc64]

  Larry Walls praktiske uddragnings- og rapportsprog (Perl)

• dep: python [hppa, ppc64, sh4, sparc64]

  Package not available

• dep: python-pysam [hppa, ppc64, sh4, sparc64]

  Package not available

• dep: python-ruffus [hppa, ppc64, sh4, sparc64]

  Package not available

• dep: python3 [not hppa, ppc64, sh4, sparc64]

  Interaktivt objektorienteret højniveausprog - standardversion af Python 3

• dep: python3-pysam [not hppa, ppc64, sh4, sparc64]

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• dep: python3-ruffus [not hppa, ppc64, sh4, sparc64]

  Python 3-bibliotek til beregning af datakanaler brugt indenfor bioinformatik

• dep: samtools

  Forarbejdning af sekvensopstillinger i SAM-, BAM- og CRAM-formater

• dep: zlib1g (>= 1:1.1.4) [not armhf]

  Komprimeringsbibliotek - kørselstid

  dep: zlib1g (>= 1:1.2.3.3) [armhf]

• rec: abyss [not sh4]

  De novo, parallel, sekvensassembler for korte læsninger

  rec: abyss (>= 2.0.2-1) [sh4]

• sug: abyss (>= 1.5.2-2)

  De novo, parallel, sekvensassembler for korte læsninger

Download sga

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	0.10.15-7	755.4 kB	2,753.0 kB	[list of files]
amd64	0.10.15-7+b1	812.5 kB	2,432.0 kB	[list of files]
arm64	0.10.15-7+b1	580.5 kB	1,792.0 kB	[list of files]
armel	0.10.15-7+b1	564.3 kB	1,727.0 kB	[list of files]
armhf	0.10.15-7+b2	608.1 kB	1,342.0 kB	[list of files]
hppa (unofficial port)	0.10.14-2	977.9 kB	2,993.0 kB	[list of files]
i386	0.10.15-7+b2	939.3 kB	2,758.0 kB	[list of files]
ia64 (unofficial port)	0.10.15-7+b1	1,025.2 kB	4,829.0 kB	[list of files]
loong64 (unofficial port)	0.10.15-7	721.9 kB	2,240.0 kB	[list of files]
m68k (unofficial port)	0.10.15-7+b1	775.3 kB	2,407.0 kB	[list of files]
mips64el	0.10.15-7+b1	745.3 kB	3,062.0 kB	[list of files]
ppc64 (unofficial port)	0.10.14-2	735.4 kB	2,620.0 kB	[list of files]
ppc64el	0.10.15-7+b1	692.6 kB	2,304.0 kB	[list of files]
riscv64	0.10.15-7+b2	675.7 kB	1,491.0 kB	[list of files]
sh4 (unofficial port)	0.10.15-4	1,052.2 kB	2,782.0 kB	[list of files]
sparc64 (unofficial port)	0.10.14-2	770.0 kB	2,627.0 kB	[list of files]
x32 (unofficial port)	0.10.15-7+b1	817.2 kB	2,291.0 kB	[list of files]