Package: hmmer (3.4+dfsg-2 and others)

[ Source: hmmer  ]

Profilskjulte Markov-modeller for proteinsekvensanalyse

HMMER er en implementering af profilskjulte Markov-modelmetoder for sensitive søgninger i biologiske sekvensdatabaser med brug af flersekvensjusteringer som forespørgsler.

Givet en flersekvensjustering som input, bygger HMMER en statistisk model kaldt »skjult Markovmodel«, som kan bruges som en forespørgsel ind i en sekvensdatabase for at finde (og/eller justere) yderligere homologier for sekvensfamilien.

Tags: Biology: Clustal/ALN, Proteins, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::searching, works-with-format::plaintext, Works with: Databases

Other Packages Related to hmmer

• dep: libc6 (>= 2.15) [hppa, m68k, sparc64]

  GNU C-bibliotek: Delte biblioteker
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.19) [sh4]

  dep: libc6 (>= 2.34) [amd64, arm64, i386, ppc64, x32]

• dep: libc6.1 (>= 2.15) [alpha]

  GNU C-bibliotek: Delte biblioteker
  also a virtual package provided by libc6.1-udeb

• dep: libdivsufsort3 (>= 2.0.1) [amd64, arm64, i386, ppc64, x32]

  Hurtig suffiks-tabelkonstruktion

• sug: hmmer-doc (>= 3.1b2-1) [alpha, hppa, m68k, sh4, sparc64]

  Profilskjulte Markov-modeller for proteinsekvensanalyse - dokumentation

  sug: hmmer-doc (>= 3.4+dfsg-2) [amd64, arm64, i386, ppc64, x32]

Download hmmer

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	3.1b2-1	1,129.7 kB	13,177.0 kB	[list of files]
amd64	3.4+dfsg-2	1,037.5 kB	6,466.0 kB	[list of files]
arm64	3.4+dfsg-2+b1	954.2 kB	7,122.0 kB	[list of files]
hppa (unofficial port)	3.1b2-1	969.6 kB	10,721.0 kB	[list of files]
i386	3.4+dfsg-2	1,068.1 kB	6,187.0 kB	[list of files]
m68k (unofficial port)	3.1b2-1	850.4 kB	8,566.0 kB	[list of files]
ppc64 (unofficial port)	3.4+dfsg-2	1,011.3 kB	6,929.0 kB	[list of files]
sh4 (unofficial port)	3.1b2-1	908.8 kB	8,358.0 kB	[list of files]
sparc64 (unofficial port)	3.1b2-1	840.5 kB	9,376.0 kB	[list of files]
x32 (unofficial port)	3.4+dfsg-2	1,049.1 kB	6,365.0 kB	[list of files]