Пакет: r-bioc-deseq2 (1.44.0+dfsg-1 и други)

[ Източник: r-bioc-deseq2  ]

R package for RNA-Seq Differential Expression Analysis

Differential gene expression analysis based on the negative binomial distribution. Estimate variance-mean dependence in count data from high-throughput sequencing assays and test for differential expression based on a model using the negative binomial distribution.

Други пакети, свързани с r-bioc-deseq2

• dep: libblas3

  Basic Linear Algebra Reference implementations, shared library

  или libblas.so.3

  виртуален пакет, предлаган от libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.27) [riscv64]

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

  dep: libc6 (>= 2.29) [не alpha, ia64, riscv64, sh4]

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [не hppa, ia64, sh4]

  GCC support library

  dep: libgcc-s1 (>= 3.3.4) [sh4]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libgfortran5 (>= 8) [sparc64]

  Runtime library for GNU Fortran applications

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

  или liblapack.so.3

  виртуален пакет, предлаган от libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libstdc++6 (>= 13.1) [hppa, ia64, sh4]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 14) [не hppa, ia64, sh4, x32]

  dep: libstdc++6 (>= 9) [x32]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: r-api-4.0

  виртуален пакет, предлаган от r-base-core

• dep: r-api-bioc-3.16 [x32]

  Пакетът не е наличен

• dep: r-api-bioc-3.18 [hppa, ia64, sh4]

  Пакетът не е наличен

• dep: r-api-bioc-3.19 [не hppa, ia64, sh4, x32]

  виртуален пакет, предлаган от r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-2) [x32]

  GNU R core of statistical computation and graphics system

• dep: r-bioc-biobase [hppa, ia64, sh4, x32]

  base functions for Bioconductor

  dep: r-bioc-biobase (>= 2.64.0) [не hppa, ia64, sh4, x32]

• dep: r-bioc-biocgenerics (>= 0.50.0) [не hppa, ia64, sh4, x32]

  generic functions for Bioconductor

  dep: r-bioc-biocgenerics (>= 0.7.5) [hppa, ia64, sh4, x32]

• dep: r-bioc-biocparallel [hppa, ia64, sh4, x32]

  BioConductor facilities for parallel evaluation

  dep: r-bioc-biocparallel (>= 1.38.0) [не hppa, ia64, sh4, x32]

• dep: r-bioc-geneplotter [x32]

  R package of functions for plotting genomic data

• dep: r-bioc-genomicranges [hppa, ia64, sh4, x32]

  BioConductor representation and manipulation of genomic intervals

  dep: r-bioc-genomicranges (>= 1.56.1) [не hppa, ia64, sh4, x32]

• dep: r-bioc-iranges [hppa, ia64, sh4, x32]

  GNU R low-level containers for storing sets of integer ranges

  dep: r-bioc-iranges (>= 2.38.1) [не hppa, ia64, sh4, x32]

• dep: r-bioc-matrixgenerics [hppa, ia64, sh4]

  S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects

  dep: r-bioc-matrixgenerics (>= 1.16.0) [не hppa, ia64, sh4, x32]

• dep: r-bioc-s4vectors (>= 0.23.18) [hppa, ia64, sh4, x32]

  BioConductor S4 implementation of vectors and lists

  dep: r-bioc-s4vectors (>= 0.42.1) [не hppa, ia64, sh4, x32]

• dep: r-bioc-summarizedexperiment (>= 1.1.6) [hppa, ia64, sh4, x32]

  BioConductor assay container

  dep: r-bioc-summarizedexperiment (>= 1.34.0) [не hppa, ia64, sh4, x32]

• dep: r-cran-ggplot2 [x32]

  implementation of the Grammar of Graphics

  dep: r-cran-ggplot2 (>= 3.4.0) [не x32]

• dep: r-cran-locfit

  GNU R local regression, likelihood and density estimation

• dep: r-cran-matrixstats

  GNU R methods that apply to rows and columns of a matrix

• dep: r-cran-rcpp (>= 0.11.0)

  GNU R package for Seamless R and C++ Integration

• dep: r-cran-rcpparmadillo

  GNU R package for Armadillo C++ linear algebra library

• sug: r-bioc-glmgampoi [hppa, ia64, sh4, x32]

  GNU R fit a Gamma-Poisson generalized linear model

  sug: r-bioc-glmgampoi (>= 1.16.0) [не hppa, ia64, sh4, x32]

• sug: r-bioc-tximeta [hppa, ia64, sh4, x32]

  Transcript Quantification Import with Automatic Metadata

  sug: r-bioc-tximeta (>= 1.22.1) [не hppa, ia64, sh4, x32]

• sug: r-bioc-tximport [hppa, ia64, sh4, x32]

  transcript-level estimates for biological sequencing

  sug: r-bioc-tximport (>= 1.32.0) [не hppa, ia64, sh4, x32]

• sug: r-bioc-tximportdata [hppa, ia64, sh4, x32]

  GNU R various transcript abundance quantifiers

  sug: r-bioc-tximportdata (>= 1.32.0) [не hppa, ia64, sh4, x32]

• sug: r-cran-biocmanager

  access the Bioconductor project package repository

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-pbapply

  GNU R package providing progress bars for vectorized R functions

• sug: r-cran-pheatmap

  GNU R package to create pretty heatmaps

• sug: r-cran-rcolorbrewer

  GNU R package providing suitable color palettes

• sug: r-cran-readr

  GNU R package to read rectangular text data

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-testthat

  GNU R testsuite

Изтегляне на r-bioc-deseq2

Изтегляне за всички налични архитектури

Архитектура	Версия	Големина на пакета	Големина след инсталиране	Файлове
alpha (неофициална архитектура)	1.44.0+dfsg-1	1 245,5 кБ	1 752,0 кБ	[списък на файловете]
amd64	1.44.0+dfsg-1	1 253,3 кБ	1 740,0 кБ	[списък на файловете]
arm64	1.44.0+dfsg-1	1 240,1 кБ	1 752,0 кБ	[списък на файловете]
hppa (неофициална архитектура)	1.42.1+dfsg-1	1 234,4 кБ	1 718,0 кБ	[списък на файловете]
ia64 (неофициална архитектура)	1.42.1+dfsg-1	1 254,7 кБ	1 916,0 кБ	[списък на файловете]
mips64el	1.44.0+dfsg-1	1 243,4 кБ	1 760,0 кБ	[списък на файловете]
ppc64 (неофициална архитектура)	1.44.0+dfsg-1	1 254,1 кБ	1 820,0 кБ	[списък на файловете]
ppc64el	1.44.0+dfsg-1	1 253,4 кБ	1 816,0 кБ	[списък на файловете]
riscv64	1.44.0+dfsg-1	1 251,0 кБ	1 687,0 кБ	[списък на файловете]
s390x	1.44.0+dfsg-1	1 254,1 кБ	1 748,0 кБ	[списък на файловете]
sh4 (неофициална архитектура)	1.42.1+dfsg-1	1 256,3 кБ	1 738,0 кБ	[списък на файловете]
sparc64 (неофициална архитектура)	1.44.0+dfsg-1	1 236,9 кБ	2 526,0 кБ	[списък на файловете]
x32 (неофициална архитектура)	1.38.3+dfsg-1	1 258,9 кБ	1 736,0 кБ	[списък на файловете]