软件包：r-bioc-deseq2（1.44.0+dfsg-1 以及其他的）

[ 源代码： r-bioc-deseq2  ]

R package for RNA-Seq Differential Expression Analysis

Differential gene expression analysis based on the negative binomial distribution. Estimate variance-mean dependence in count data from high-throughput sequencing assays and test for differential expression based on a model using the negative binomial distribution.

其他与 r-bioc-deseq2 有关的软件包

• dep: libblas3

  Basic Linear Algebra Reference implementations, shared library

  或者 libblas.so.3

  本虚包由这些包填实： libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.27) [riscv64]

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

  dep: libc6 (>= 2.29) [除 alpha, ia64, riscv64, sh4]

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [除 hppa, ia64, sh4]

  GCC 支持库

  dep: libgcc-s1 (>= 3.3.4) [sh4]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC 支持库

• dep: libgfortran5 (>= 8) [sparc64]

  Runtime library for GNU Fortran applications

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

  或者 liblapack.so.3

  本虚包由这些包填实： libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libstdc++6 (>= 13.1) [hppa, ia64, sh4]

  GNU 标准 C++ 库，第3版

  dep: libstdc++6 (>= 14) [除 hppa, ia64, sh4, x32]

  dep: libstdc++6 (>= 9) [x32]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: r-api-4.0

  本虚包由这些包填实： r-base-core

• dep: r-api-bioc-3.16 [x32]

  软件包暂时不可用

• dep: r-api-bioc-3.18 [hppa, ia64, sh4]

  软件包暂时不可用

• dep: r-api-bioc-3.19 [除 hppa, ia64, sh4, x32]

  本虚包由这些包填实： r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-2) [x32]

  GNU R core of statistical computation and graphics system

• dep: r-bioc-biobase [hppa, ia64, sh4, x32]

  base functions for Bioconductor

  dep: r-bioc-biobase (>= 2.64.0) [除 hppa, ia64, sh4, x32]

• dep: r-bioc-biocgenerics (>= 0.50.0) [除 hppa, ia64, sh4, x32]

  generic functions for Bioconductor

  dep: r-bioc-biocgenerics (>= 0.7.5) [hppa, ia64, sh4, x32]

• dep: r-bioc-biocparallel [hppa, ia64, sh4, x32]

  BioConductor facilities for parallel evaluation

  dep: r-bioc-biocparallel (>= 1.38.0) [除 hppa, ia64, sh4, x32]

• dep: r-bioc-geneplotter [x32]

  R package of functions for plotting genomic data

• dep: r-bioc-genomicranges [hppa, ia64, sh4, x32]

  BioConductor representation and manipulation of genomic intervals

  dep: r-bioc-genomicranges (>= 1.56.1) [除 hppa, ia64, sh4, x32]

• dep: r-bioc-iranges [hppa, ia64, sh4, x32]

  GNU R low-level containers for storing sets of integer ranges

  dep: r-bioc-iranges (>= 2.38.1) [除 hppa, ia64, sh4, x32]

• dep: r-bioc-matrixgenerics [hppa, ia64, sh4]

  S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects

  dep: r-bioc-matrixgenerics (>= 1.16.0) [除 hppa, ia64, sh4, x32]

• dep: r-bioc-s4vectors (>= 0.23.18) [hppa, ia64, sh4, x32]

  BioConductor S4 implementation of vectors and lists

  dep: r-bioc-s4vectors (>= 0.42.1) [除 hppa, ia64, sh4, x32]

• dep: r-bioc-summarizedexperiment (>= 1.1.6) [hppa, ia64, sh4, x32]

  BioConductor assay container

  dep: r-bioc-summarizedexperiment (>= 1.34.0) [除 hppa, ia64, sh4, x32]

• dep: r-cran-ggplot2 [x32]

  implementation of the Grammar of Graphics

  dep: r-cran-ggplot2 (>= 3.4.0) [除 x32]

• dep: r-cran-locfit

  GNU R local regression, likelihood and density estimation

• dep: r-cran-matrixstats

  GNU R methods that apply to rows and columns of a matrix

• dep: r-cran-rcpp (>= 0.11.0)

  GNU R package for Seamless R and C++ Integration

• dep: r-cran-rcpparmadillo

  GNU R package for Armadillo C++ linear algebra library

• sug: r-bioc-glmgampoi [hppa, ia64, sh4, x32]

  GNU R fit a Gamma-Poisson generalized linear model

  sug: r-bioc-glmgampoi (>= 1.16.0) [除 hppa, ia64, sh4, x32]

• sug: r-bioc-tximeta [hppa, ia64, sh4, x32]

  Transcript Quantification Import with Automatic Metadata

  sug: r-bioc-tximeta (>= 1.22.1) [除 hppa, ia64, sh4, x32]

• sug: r-bioc-tximport [hppa, ia64, sh4, x32]

  transcript-level estimates for biological sequencing

  sug: r-bioc-tximport (>= 1.32.0) [除 hppa, ia64, sh4, x32]

• sug: r-bioc-tximportdata [hppa, ia64, sh4, x32]

  GNU R various transcript abundance quantifiers

  sug: r-bioc-tximportdata (>= 1.32.0) [除 hppa, ia64, sh4, x32]

• sug: r-cran-biocmanager

  access the Bioconductor project package repository

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-pbapply

  GNU R package providing progress bars for vectorized R functions

• sug: r-cran-pheatmap

  GNU R package to create pretty heatmaps

• sug: r-cran-rcolorbrewer

  GNU R package providing suitable color palettes

• sug: r-cran-readr

  GNU R package to read rectangular text data

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-testthat

  GNU R testsuite

下载 r-bioc-deseq2

下载可用于所有硬件架构的

硬件架构	版本	软件包大小	安装后大小	文件
alpha （非官方移植版）	1.44.0+dfsg-1	1,245.5 kB	1,752.0 kB	[文件列表]
amd64	1.44.0+dfsg-1	1,253.3 kB	1,740.0 kB	[文件列表]
arm64	1.44.0+dfsg-1	1,240.1 kB	1,752.0 kB	[文件列表]
hppa （非官方移植版）	1.42.1+dfsg-1	1,234.4 kB	1,718.0 kB	[文件列表]
ia64 （非官方移植版）	1.42.1+dfsg-1	1,254.7 kB	1,916.0 kB	[文件列表]
mips64el	1.44.0+dfsg-1	1,243.4 kB	1,760.0 kB	[文件列表]
ppc64 （非官方移植版）	1.44.0+dfsg-1	1,254.1 kB	1,820.0 kB	[文件列表]
ppc64el	1.44.0+dfsg-1	1,253.4 kB	1,816.0 kB	[文件列表]
riscv64	1.44.0+dfsg-1	1,251.0 kB	1,687.0 kB	[文件列表]
s390x	1.44.0+dfsg-1	1,254.1 kB	1,748.0 kB	[文件列表]
sh4 （非官方移植版）	1.42.1+dfsg-1	1,256.3 kB	1,738.0 kB	[文件列表]
sparc64 （非官方移植版）	1.44.0+dfsg-1	1,236.9 kB	2,526.0 kB	[文件列表]
x32 （非官方移植版）	1.38.3+dfsg-1	1,258.9 kB	1,736.0 kB	[文件列表]