套件：gmap（2024-06-24+ds-1）

[ 原始碼： gmap  ]

spliced and SNP-tolerant alignment for mRNA and short reads

This package contains the programs GMAP and GSNAP as well as utilities to manage genome databases in GMAP/GSNAP format. GMAP (Genomic Mapping and Alignment Program) is a tool for aligning EST, mRNA and cDNA sequences. GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for aligning single-end and paired-end transcriptome reads. Both tools can use a database of

 * known splice sites and identify novel splice sites.
 * known single-nucleotide polymorphisms (SNPs).

GSNAP can align bisulfite-treated DNA.

標籤: 領域: 生物學, field::biology:bioinformatics, field::biology:structural, 角色: 程式, Purpose: Analysing

其他與 gmap 有關的套件

• dep: libbz2-1.0

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.34)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: zlib1g (>= 1:1.2.6)

  壓縮函式庫 - 跑程式時用(runtime)

下載 gmap

下載可用於所有硬體架構的

硬體架構	套件大小	安裝後大小	檔案
amd64	33，506。7 kB	268，184。0 kB	[檔案列表]
arm64	6，835。4 kB	61，056。0 kB	[檔案列表]
armel	4，864。7 kB	46，197。0 kB	[檔案列表]
armhf	4，929。1 kB	44，049。0 kB	[檔案列表]
i386	5，118。2 kB	46，413。0 kB	[檔案列表]
mips64el	5，838。5 kB	57，667。0 kB	[檔案列表]
ppc64el	7，091。5 kB	63，616。0 kB	[檔案列表]
riscv64	6，328。1 kB	59，344。0 kB	[檔案列表]