软件包：gmap（2024-11-20+ds-1）

[ 源代码： gmap  ]

spliced and SNP-tolerant alignment for mRNA and short reads

This package contains the programs GMAP and GSNAP as well as utilities to manage genome databases in GMAP/GSNAP format. GMAP (Genomic Mapping and Alignment Program) is a tool for aligning EST, mRNA and cDNA sequences. GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for aligning single-end and paired-end transcriptome reads. Both tools can use a database of

 * known splice sites and identify novel splice sites.
 * known single-nucleotide polymorphisms (SNPs).

GSNAP can align bisulfite-treated DNA.

标签: 领域: 生物学, field::biology:bioinformatics, field::biology:structural, 角色: 程序, Purpose: Analysing

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硬件架构	软件包大小	安装后大小	文件
amd64	33,744.7 kB	268,822.0 kB	[文件列表]
arm64	6,859.2 kB	61,266.0 kB	[文件列表]
armel	4,930.9 kB	46,231.0 kB	[文件列表]
armhf	4,950.9 kB	44,107.0 kB	[文件列表]
i386	5,170.3 kB	46,587.0 kB	[文件列表]
mips64el	5,924.4 kB	57,816.0 kB	[文件列表]
ppc64el	7,139.9 kB	63,634.0 kB	[文件列表]
riscv64	6,368.6 kB	59,310.0 kB	[文件列表]