软件包：gmap（2021-12-17+ds-3）

[ 源代码： gmap  ]

spliced and SNP-tolerant alignment for mRNA and short reads

This package contains the programs GMAP and GSNAP as well as utilities to manage genome databases in GMAP/GSNAP format. GMAP (Genomic Mapping and Alignment Program) is a tool for aligning EST, mRNA and cDNA sequences. GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for aligning single-end and paired-end transcriptome reads. Both tools can use a database of

 * known splice sites and identify novel splice sites.
 * known single-nucleotide polymorphisms (SNPs).

GSNAP can align bisulfite-treated DNA.

标签: 领域: 生物学, field::biology:bioinformatics, field::biology:structural, 角色: 程序, Purpose: Analysing

其他与 gmap 有关的软件包

• dep: libbz2-1.0

  高品质块排序文件压缩程序库 - 运行时库

• dep: libc6 (>= 2.34)

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

• dep: perl

  拉里 沃尔的实用报表提取语言(Perl)

• dep: zlib1g (>= 1:1.2.6)

  压缩库 - 运行时

下载 gmap

下载可用于所有硬件架构的

硬件架构	软件包大小	安装后大小	文件
amd64	11,077.9 kB	89,482.0 kB	[文件列表]
arm64	6,950.3 kB	58,950.0 kB	[文件列表]
armel	5,407.5 kB	44,524.0 kB	[文件列表]
armhf	5,788.3 kB	42,476.0 kB	[文件列表]
i386	6,086.9 kB	43,904.0 kB	[文件列表]
mips64el	5,331.8 kB	55,440.0 kB	[文件列表]
mipsel	5,324.2 kB	46,108.0 kB	[文件列表]
ppc64el	7,299.8 kB	60,998.0 kB	[文件列表]