软件包：rna-star（2.7.11b+dfsg-2 以及其他的）

[ 源代码： rna-star  ]

ultrafast universal RNA-seq aligner

Spliced Transcripts Alignment to a Reference (STAR) software based on a previously undescribed RNA-seq alignment algorithm that uses sequential maximum mappable seed search in uncompressed suffix arrays followed by seed clustering and stitching procedure. STAR outperforms other aligners by a factor of >50 in mapping speed, aligning to the human genome 550 million 2 × 76 bp paired-end reads per hour on a modest 12-core server, while at the same time improving alignment sensitivity and precision. In addition to unbiased de novo detection of canonical junctions, STAR can discover non-canonical splices and chimeric (fusion) transcripts, and is also capable of mapping full-length RNA sequences. Using Roche 454 sequencing of reverse transcription polymerase chain reaction amplicons, the authors experimentally validated 1960 novel intergenic splice junctions with an 80-90% success rate, corroborating the high precision of the STAR mapping strategy.

标签: 生物学: 核酸, 领域: 生物学, field::biology:bioinformatics, implemented-in::c++, 角色: 程序, Purpose: use::analysing, works-with::biological-sequence

其他与 rna-star 有关的软件包

• dep: libc6 (>= 2.16) [x32]

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

  dep: libc6 (>= 2.19) [sh4]

  dep: libc6 (>= 2.38) [除 alpha, m68k, sh4, x32]

  dep: libc6 (>= 2.4) [m68k]

• dep: libc6.1 (>= 2.38) [alpha]

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6.1-udeb

• dep: libgcc-s1 (>= 3.3.1) [除 m68k, sh4, x32]

  GCC 支持库

• dep: libgcc1 (>= 1:3.3.1) [x32]

  软件包暂时不可用

  dep: libgcc1 (>= 1:4.2.1) [sh4]

• dep: libgcc2 (>= 4.2.1) [m68k]

  软件包暂时不可用

• dep: libgomp1 (>= 4.9) [x32]

  GCC OpenMP（GOMP）支持库

  dep: libgomp1 (>= 6) [除 m68k, sh4, x32]

• dep: libhts1 (>= 1.0) [m68k, sh4, x32]

  软件包暂时不可用

• dep: libhts3t64 (>= 1.17) [除 m68k, sh4, x32]

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 14) [除 m68k, sh4, x32]

  GNU 标准 C++ 库，第3版

  dep: libstdc++6 (>= 4.9) [sh4]

  dep: libstdc++6 (>= 5.2) [m68k, x32]

下载 rna-star

下载可用于所有硬件架构的

硬件架构	版本	软件包大小	安装后大小	文件
alpha （非官方移植版）	2.7.11b+dfsg-2	742.1 kB	3,087.0 kB	[文件列表]
amd64	2.7.11b+dfsg-2+b1	3,461.8 kB	22,228.0 kB	[文件列表]
arm64	2.7.11b+dfsg-2+b1	709.7 kB	2,700.0 kB	[文件列表]
m68k （非官方移植版）	2.4.2a+dfsg-1+b1	314.5 kB	691.0 kB	[文件列表]
mips64el	2.7.11b+dfsg-2+b1	673.6 kB	2,998.0 kB	[文件列表]
ppc64el	2.7.11b+dfsg-2+b1	743.6 kB	3,084.0 kB	[文件列表]
riscv64	2.7.11b+dfsg-2+b1	752.2 kB	2,276.0 kB	[文件列表]
sh4 （非官方移植版）	2.4.2a+dfsg-1	405.5 kB	734.0 kB	[文件列表]
x32 （非官方移植版）	2.5.2a+dfsg-2	361.0 kB	797.0 kB	[文件列表]