Paketti: rna-star (2.7.11b+dfsg-2 ja muut)

[ Source: rna-star  ]

ultrafast universal RNA-seq aligner

Spliced Transcripts Alignment to a Reference (STAR) software based on a previously undescribed RNA-seq alignment algorithm that uses sequential maximum mappable seed search in uncompressed suffix arrays followed by seed clustering and stitching procedure. STAR outperforms other aligners by a factor of >50 in mapping speed, aligning to the human genome 550 million 2 × 76 bp paired-end reads per hour on a modest 12-core server, while at the same time improving alignment sensitivity and precision. In addition to unbiased de novo detection of canonical junctions, STAR can discover non-canonical splices and chimeric (fusion) transcripts, and is also capable of mapping full-length RNA sequences. Using Roche 454 sequencing of reverse transcription polymerase chain reaction amplicons, the authors experimentally validated 1960 novel intergenic splice junctions with an 80-90% success rate, corroborating the high precision of the STAR mapping strategy.

Tagit: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::c++, Role: Program, Purpose: use::analysing, works-with::biological-sequence

Muut pakettiin rna-star liittyvät paketit

• dep: libc6 (>= 2.16) [x32]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

  dep: libc6 (>= 2.19) [sh4]

  dep: libc6 (>= 2.38) [amd64, arm64, mips64el, ppc64el, riscv64]

  dep: libc6 (>= 2.4) [m68k]

  dep: libc6 (>= 2.40) [loong64]

• dep: libc6.1 (>= 2.38) [alpha]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6.1-udeb

• dep: libgcc-s1 (>= 3.3.1) [ei m68k, sh4, x32]

  GCC:n apukirjasto

• dep: libgcc1 (>= 1:3.3.1) [x32]

  Paketti ei saatavilla

  dep: libgcc1 (>= 1:4.2.1) [sh4]

• dep: libgcc2 (>= 4.2.1) [m68k]

  Paketti ei saatavilla

• dep: libgomp1 (>= 4.9) [x32]

  GCC OpenMP (GOMP) support library

  dep: libgomp1 (>= 6) [ei m68k, sh4, x32]

• dep: libhts1 (>= 1.0) [m68k, sh4, x32]

  Paketti ei saatavilla

• dep: libhts3t64 (>= 1.17) [ei m68k, sh4, x32]

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 14) [ei m68k, sh4, x32]

  GNU standardi C++ -kirjasto, versio 3

  dep: libstdc++6 (>= 4.9) [sh4]

  dep: libstdc++6 (>= 5.2) [m68k, x32]

Imuroi rna-star

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
alpha (epävirallinen siirros)	2.7.11b+dfsg-2+b1	742.7 kt	3,088.0 kt	[tiedostoluettelo]
amd64	2.7.11b+dfsg-2+b2	3,410.7 kt	22,204.0 kt	[tiedostoluettelo]
arm64	2.7.11b+dfsg-2+b2	711.5 kt	2,700.0 kt	[tiedostoluettelo]
loong64 (epävirallinen siirros)	2.7.11b+dfsg-2	725.4 kt	2,699.0 kt	[tiedostoluettelo]
m68k (epävirallinen siirros)	2.4.2a+dfsg-1+b1	314.5 kt	691.0 kt	[tiedostoluettelo]
mips64el	2.7.11b+dfsg-2+b2	672.4 kt	2,998.0 kt	[tiedostoluettelo]
ppc64el	2.7.11b+dfsg-2+b2	744.2 kt	3,084.0 kt	[tiedostoluettelo]
riscv64	2.7.11b+dfsg-2+b2	745.0 kt	2,276.0 kt	[tiedostoluettelo]
sh4 (epävirallinen siirros)	2.4.2a+dfsg-1	405.5 kt	734.0 kt	[tiedostoluettelo]
x32 (epävirallinen siirros)	2.5.2a+dfsg-2	361.0 kt	797.0 kt	[tiedostoluettelo]