软件包：r-bioc-deseq2（1.38.3+dfsg-1）

[ 源代码： r-bioc-deseq2  ]

R package for RNA-Seq Differential Expression Analysis

Differential gene expression analysis based on the negative binomial distribution. Estimate variance-mean dependence in count data from high-throughput sequencing assays and test for differential expression based on a model using the negative binomial distribution.

其他与 r-bioc-deseq2 有关的软件包

• dep: libblas3

  Basic Linear Algebra Reference implementations, shared library

  或者 libblas.so.3

  本虚包由这些包填实： libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.29)

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

• dep: libgcc-s1 (>= 3.0) [除 armel, armhf]

  GCC 支持库

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

  或者 liblapack.so.3

  本虚包由这些包填实： libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libstdc++6 (>= 5.2) [armel, armhf]

  GNU 标准 C++ 库，第3版

  dep: libstdc++6 (>= 9) [除 armel, armhf]

• dep: r-api-4.0

  本虚包由这些包填实： r-base-core

• dep: r-api-bioc-3.16

  本虚包由这些包填实： r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-2)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-biobase

  base functions for Bioconductor

• dep: r-bioc-biocgenerics (>= 0.7.5)

  generic functions for Bioconductor

• dep: r-bioc-biocparallel

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• dep: r-bioc-geneplotter

  R package of functions for plotting genomic data

• dep: r-bioc-genomicranges

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-s4vectors (>= 0.23.18)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-summarizedexperiment (>= 1.1.6)

  BioConductor assay container

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-locfit

  GNU R local regression, likelihood and density estimation

• dep: r-cran-matrixstats

  GNU R methods that apply to rows and columns of a matrix

• dep: r-cran-rcpp (>= 0.11.0)

  GNU R package for Seamless R and C++ Integration

• dep: r-cran-rcpparmadillo

  GNU R package for Armadillo C++ linear algebra library

• sug: r-bioc-glmgampoi

  GNU R fit a Gamma-Poisson generalized linear model

• sug: r-bioc-tximeta

  Transcript Quantification Import with Automatic Metadata

• sug: r-bioc-tximport

  transcript-level estimates for biological sequencing

• sug: r-bioc-tximportdata

  GNU R various transcript abundance quantifiers

• sug: r-cran-biocmanager

  access the Bioconductor project package repository

• sug: r-cran-knitr

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• sug: r-cran-pbapply

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• sug: r-cran-pheatmap

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• sug: r-cran-rcolorbrewer

  GNU R package providing suitable color palettes

• sug: r-cran-readr

  GNU R package to read rectangular text data

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-testthat

  GNU R testsuite

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硬件架构	软件包大小	安装后大小	文件
amd64	1,258.2 kB	1,757.0 kB	[文件列表]
arm64	1,245.6 kB	1,781.0 kB	[文件列表]
armel	1,248.4 kB	1,727.0 kB	[文件列表]
armhf	1,246.4 kB	1,671.0 kB	[文件列表]
i386	1,267.3 kB	1,775.0 kB	[文件列表]
mips64el	1,249.0 kB	1,790.0 kB	[文件列表]
mipsel	1,250.9 kB	1,786.0 kB	[文件列表]
ppc64el	1,259.2 kB	1,781.0 kB	[文件列表]
s390x	1,250.4 kB	1,753.0 kB	[文件列表]