软件包：samtools（1.11-1）

[ 源代码： samtools  ]

processing sequence alignments in SAM, BAM and CRAM formats

Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server.

标签: 领域: 生物学, 生物信息学, 实做语言: implemented-in::c, interface::commandline, 网络: 客户端, 网络协议: FTP, protocol::http, role::program, 范围: 实用程序, 界面工具箱: Ncurses TUI, Purpose: use::analysing, use::calculating, Filtering, 处理: Biological Sequence

其他与 samtools 有关的软件包

• dep: libc6 (>= 2.29)

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

• dep: libhts3 (>= 1.11)

  C library for high-throughput sequencing data formats

• dep: libncurses6 (>= 6)

  终端控制的共享库

• dep: libtinfo6 (>= 6)

  用于终端处理的共享底层 terminfo 库

• dep: zlib1g (>= 1:1.1.4) [除 armel, armhf, i386, mipsel]

  压缩库 - 运行时

  dep: zlib1g (>= 1:1.2.3.3) [armel, armhf, i386, mipsel]

• sug: cwltool

  Common Workflow Language reference implementation

下载 samtools

下载可用于所有硬件架构的

硬件架构	软件包大小	安装后大小	文件
amd64	531.8 kB	1,201.0 kB	[文件列表]
arm64	513.2 kB	1,149.0 kB	[文件列表]
armel	503.0 kB	1,134.0 kB	[文件列表]
armhf	507.0 kB	978.0 kB	[文件列表]
i386	562.3 kB	1,306.0 kB	[文件列表]
mips64el	518.2 kB	1,281.0 kB	[文件列表]
mipsel	525.7 kB	1,240.0 kB	[文件列表]
ppc64el	559.1 kB	1,669.0 kB	[文件列表]
s390x	512.5 kB	1,229.0 kB	[文件列表]