套件：samtools（1.11-1）

[ 原始碼： samtools  ]

processing sequence alignments in SAM, BAM and CRAM formats

Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server.

標籤: 領域: 生物學, 生物資訊學, 實做語言: implemented-in::c, interface::commandline, 網路: 客戶端, Network Protocol: FTP, protocol::http, role::program, 範圍: 實用程式, Interface Toolkit: Ncurses TUI, Purpose: use::analysing, use::calculating, Filtering, 處理: Biological Sequence

其他與 samtools 有關的套件

• dep: libc6 (>= 2.29)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

• dep: libhts3 (>= 1.11)

  C library for high-throughput sequencing data formats

• dep: libncurses6 (>= 6)

  shared libraries for terminal handling

• dep: libtinfo6 (>= 6)

  shared low-level terminfo library for terminal handling

• dep: zlib1g (>= 1:1.1.4) [除 armel, armhf, i386, mipsel]

  壓縮函式庫 - 跑程式時用(runtime)

  dep: zlib1g (>= 1:1.2.3.3) [armel, armhf, i386, mipsel]

• sug: cwltool

  Common Workflow Language reference implementation

下載 samtools

下載可用於所有硬體架構的

硬體架構	套件大小	安裝後大小	檔案
amd64	531。8 kB	1，201。0 kB	[檔案列表]
arm64	513。2 kB	1，149。0 kB	[檔案列表]
armel	503。0 kB	1，134。0 kB	[檔案列表]
armhf	507。0 kB	978。0 kB	[檔案列表]
i386	562。3 kB	1，306。0 kB	[檔案列表]
mips64el	518。2 kB	1，281。0 kB	[檔案列表]
mipsel	525。7 kB	1，240。0 kB	[檔案列表]
ppc64el	559。1 kB	1，669。0 kB	[檔案列表]
s390x	512。5 kB	1，229。0 kB	[檔案列表]