Paket: murasaki-mpi (1.68.6-14 ve diğerleri)

[ Kaynak: murasaki  ]

homology detection tool across multiple large genomes (MPI-version)

Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.

Murasaki is an anchor alignment software, which is

 * exteremely fast (17 CPU hours for whole Human x Mouse genome (with
   40 nodes: 52 wall minutes))
 * scalable (Arbitrarily parallelizable across multiple nodes using MPI.
   Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
 * unlimited pattern length
 * repeat tolerant
 * intelligent noise reduction

This package provides the MPI-enabled binary for murasaki. While this will speed up operation on multi-processor machines it will slow down on a single processor.

murasaki-mpi ile İlgili Diğer Paketler

• dep: libboost-filesystem1.83.0 (>= 1.83.0)

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-iostreams1.83.0 (>= 1.83.0)

  Boost.Iostreams Library

• dep: libc6 (>= 2.38) [alpha, ia64, loong64, sh4 değil]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

  dep: libc6 (>= 2.40) [loong64, sh4]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6.1-udeb

  dep: libc6.1 (>= 2.38) [alpha]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, i386, loong64, mips64el, ppc64, ppc64el, s390x, x32]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libmpich12 [armel, armhf, hppa, i386, m68k, sh4]

  Shared libraries for MPICH

  dep: libmpich12 (>= 4.2.0) [x32]

• dep: libopenmpi3t64 (>= 4.1.6) [ia64]

  high performance message passing library -- shared library

• dep: libopenmpi40 (>= 5.0.6) [armel, armhf, hppa, i386, ia64, m68k, sh4, x32 değil]

  high performance message passing library -- shared library

• dep: libstdc++6 (>= 13.1) [ia64, m68k]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 14) [ia64, m68k değil]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: murasaki-common

  homology detection tool across multiple large genomes (common files)

murasaki-mpi indir

Tüm mevcut mimariler için indir

Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
alpha (resmi olmayan port)	1.68.6-14+b1	638,1 kB	5.113,0 kB	[dosya listesi]
amd64	1.68.6-14+b1	676,9 kB	4.527,0 kB	[dosya listesi]
arm64	1.68.6-14+b1	581,3 kB	4.455,0 kB	[dosya listesi]
armel	1.68.6-14	492,4 kB	3.433,0 kB	[dosya listesi]
armhf	1.68.6-14	502,7 kB	2.429,0 kB	[dosya listesi]
hppa (resmi olmayan port)	1.68.6-14	627,1 kB	4.102,0 kB	[dosya listesi]
i386	1.68.6-14	685,4 kB	4.298,0 kB	[dosya listesi]
ia64 (resmi olmayan port)	1.68.6-13+b5	766,7 kB	9.658,0 kB	[dosya listesi]
loong64 (resmi olmayan port)	1.68.6-14+b1	616,7 kB	4.501,0 kB	[dosya listesi]
m68k (resmi olmayan port)	1.68.6-14	634,2 kB	4.589,0 kB	[dosya listesi]
mips64el	1.68.6-14+b1	635,8 kB	6.005,0 kB	[dosya listesi]
ppc64 (resmi olmayan port)	1.68.6-14+b1	647,8 kB	5.927,0 kB	[dosya listesi]
ppc64el	1.68.6-14+b1	652,6 kB	5.735,0 kB	[dosya listesi]
riscv64	1.68.6-14+b1	629,6 kB	3.299,0 kB	[dosya listesi]
s390x	1.68.6-14+b1	657,4 kB	4.974,0 kB	[dosya listesi]
sh4 (resmi olmayan port)	1.68.6-14	644,5 kB	4.173,0 kB	[dosya listesi]
sparc64 (resmi olmayan port)	1.68.6-14+b1	546,3 kB	13.466,0 kB	[dosya listesi]
x32 (resmi olmayan port)	1.68.6-14	647,4 kB	4.093,0 kB	[dosya listesi]