Package: murasaki-mpi (1.68.6-14 and others)

[ Source: murasaki  ]

homology detection tool across multiple large genomes (MPI-version)

Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.

Murasaki is an anchor alignment software, which is

 * exteremely fast (17 CPU hours for whole Human x Mouse genome (with
   40 nodes: 52 wall minutes))
 * scalable (Arbitrarily parallelizable across multiple nodes using MPI.
   Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
 * unlimited pattern length
 * repeat tolerant
 * intelligent noise reduction

This package provides the MPI-enabled binary for murasaki. While this will speed up operation on multi-processor machines it will slow down on a single processor.

Other Packages Related to murasaki-mpi

• dep: libboost-filesystem1.83.0 (>= 1.83.0)

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-iostreams1.83.0 (>= 1.83.0)

  Boost.Iostreams Library

• dep: libc6 (>= 2.38) [not alpha, ia64, sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.40) [sh4]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.38) [alpha]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, i386, mips64el, ppc64, ppc64el, s390x, x32]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libmpich12 [armel, armhf, hppa, i386, m68k, sh4]

  Shared libraries for MPICH

  dep: libmpich12 (>= 4.2.0) [x32]

• dep: libopenmpi3t64 (>= 4.1.6) [ia64]

  high performance message passing library -- shared library

• dep: libopenmpi40 (>= 5.0.6) [not armel, armhf, hppa, i386, ia64, m68k, sh4, x32]

  high performance message passing library -- shared library

• dep: libstdc++6 (>= 13.1) [ia64, m68k]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 14) [not ia64, m68k]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: murasaki-common

  homology detection tool across multiple large genomes (common files)

Download murasaki-mpi

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.68.6-14+b1	638.1 kB	5,113.0 kB	[list of files]
amd64	1.68.6-14+b1	676.9 kB	4,527.0 kB	[list of files]
arm64	1.68.6-14+b1	581.3 kB	4,455.0 kB	[list of files]
armel	1.68.6-14	492.4 kB	3,433.0 kB	[list of files]
armhf	1.68.6-14	502.7 kB	2,429.0 kB	[list of files]
hppa (unofficial port)	1.68.6-14	627.1 kB	4,102.0 kB	[list of files]
i386	1.68.6-14	685.4 kB	4,298.0 kB	[list of files]
ia64 (unofficial port)	1.68.6-13+b5	766.7 kB	9,658.0 kB	[list of files]
m68k (unofficial port)	1.68.6-14	634.2 kB	4,589.0 kB	[list of files]
mips64el	1.68.6-14+b1	635.8 kB	6,005.0 kB	[list of files]
ppc64 (unofficial port)	1.68.6-14+b1	647.8 kB	5,927.0 kB	[list of files]
ppc64el	1.68.6-14+b1	652.6 kB	5,735.0 kB	[list of files]
riscv64	1.68.6-14+b1	629.6 kB	3,299.0 kB	[list of files]
s390x	1.68.6-14+b1	657.4 kB	4,974.0 kB	[list of files]
sh4 (unofficial port)	1.68.6-14	644.5 kB	4,173.0 kB	[list of files]
sparc64 (unofficial port)	1.68.6-14+b1	546.3 kB	13,466.0 kB	[list of files]
x32 (unofficial port)	1.68.6-14	647.4 kB	4,093.0 kB	[list of files]