Pakket: murasaki-mpi (1.68.6-13 en anderen)

[ Bron: murasaki  ]

homology detection tool across multiple large genomes (MPI-version)

Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.

Murasaki is an anchor alignment software, which is

 * exteremely fast (17 CPU hours for whole Human x Mouse genome (with
   40 nodes: 52 wall minutes))
 * scalable (Arbitrarily parallelizable across multiple nodes using MPI.
   Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
 * unlimited pattern length
 * repeat tolerant
 * intelligent noise reduction

This package provides the MPI-enabled binary for murasaki. While this will speed up operation on multi-processor machines it will slow down on a single processor.

Andere aan murasaki-mpi gerelateerde pakketten

• dep: libboost-filesystem1.74.0 (>= 1.74.0) [sparc64]

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-filesystem1.83.0 (>= 1.83.0) [niet sparc64]

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-iostreams1.74.0 (>= 1.74.0) [sparc64]

  Boost.Iostreams Library

• dep: libboost-iostreams1.83.0 (>= 1.83.0) [niet sparc64]

  Boost.Iostreams Library

• dep: libboost-regex1.74.0-icu67 [sparc64]

  Pakket niet beschikbaar

• dep: libboost-system1.74.0 (>= 1.74.0) [sparc64]

  Operating system (e.g. diagnostics support) library

• dep: libc6 (>= 2.29) [sparc64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.34) [niet alpha, ia64, sh4, sparc64, x32]

  dep: libc6 (>= 2.37) [sh4]

  dep: libc6 (>= 2.38) [x32]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libcrypto++6 [sparc64]

  Pakket niet beschikbaar

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, i386, mips64el, ppc64, ppc64el, s390x, x32]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

  dep: libgcc-s1 (>= 4.3) [sparc64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support bibliotheek

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libopenmpi3 (>= 4.0.5) [sparc64]

  high performance message passing library -- shared library

• dep: libopenmpi3t64 (>= 4.1.6) [niet sparc64]

  high performance message passing library -- shared library

• dep: libstdc++6 (>= 13.1) [niet sparc64, x32]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 14) [x32]

  dep: libstdc++6 (>= 5.2) [sparc64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: murasaki-common

  homology detection tool across multiple large genomes (common files)

murasaki-mpi downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	1.68.6-13+b5	694,7 kB	5.701,0 kB	[overzicht]
amd64	1.68.6-13+b5	725,1 kB	5.095,0 kB	[overzicht]
arm64	1.68.6-13+b5	630,7 kB	5.159,0 kB	[overzicht]
armel	1.68.6-13+b5	481,5 kB	3.423,0 kB	[overzicht]
armhf	1.68.6-13+b5	495,5 kB	2.415,0 kB	[overzicht]
hppa (unofficial port)	1.68.6-13+b5	698,5 kB	4.822,0 kB	[overzicht]
i386	1.68.6-13+b5	737,6 kB	4.803,0 kB	[overzicht]
ia64 (unofficial port)	1.68.6-13+b5	766,7 kB	9.658,0 kB	[overzicht]
m68k (unofficial port)	1.68.6-13+b5	590,5 kB	4.246,0 kB	[overzicht]
mips64el	1.68.6-13+b5	688,8 kB	6.877,0 kB	[overzicht]
ppc64 (unofficial port)	1.68.6-13+b5	715,8 kB	7.143,0 kB	[overzicht]
ppc64el	1.68.6-13+b4	719,3 kB	6.503,0 kB	[overzicht]
riscv64	1.68.6-13+b3	676,6 kB	3.970,0 kB	[overzicht]
s390x	1.68.6-13+b4	707,7 kB	5.742,0 kB	[overzicht]
sh4 (unofficial port)	1.68.6-13+b4	614,4 kB	4.250,0 kB	[overzicht]
sparc64 (unofficial port)	1.68.6-11	517,7 kB	3.959,0 kB	[overzicht]
x32 (unofficial port)	1.68.6-13+b6	709,0 kB	4.602,0 kB	[overzicht]