Paket: kraken (1.1.1-4 ve diğerleri)

[ Kaynak: kraken  ]

assigning taxonomic labels to short DNA sequences

Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. Previous attempts by other bioinformatics software to accomplish this task have often used sequence alignment or machine learning techniques that were quite slow, leading to the development of less sensitive but much faster abundance estimation programs. Kraken aims to achieve high sensitivity and high speed by utilizing exact alignments of k-mers and a novel classification algorithm.

In its fastest mode of operation, for a simulated metagenome of 100 bp reads, Kraken processed over 4 million reads per minute on a single core, over 900 times faster than Megablast and over 11 times faster than the abundance estimation program MetaPhlAn. Kraken's accuracy is comparable with Megablast, with slightly lower sensitivity and very high precision.

kraken ile İlgili Diğer Paketler

• dep: jellyfish1

  count k-mers in DNA sequences

• dep: libc6 (>= 2.24) [sh4]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

  dep: libc6 (>= 2.3.4) [m68k]

  dep: libc6 (>= 2.34) [alpha, arm64, ia64, m68k, sh4 değil]

  dep: libc6 (>= 2.38) [arm64]

• dep: libc6.1 (>= 2.33) [alpha]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6.1-udeb

  dep: libc6.1 (>= 2.35) [ia64]

• dep: libgcc-s1 (>= 3.0) [hppa, ia64, m68k, sh4 değil]

  GCC support library

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libgcc1 (>= 1:4.2) [sh4]

  Paket mevcut değil

• dep: libgcc2 (>= 4.2.1) [m68k]

  Paket mevcut değil

• dep: libgomp1 (>= 4.9) [m68k, sh4]

  GCC OpenMP (GOMP) support library

  dep: libgomp1 (>= 6) [m68k, sh4 değil]

• dep: libstdc++6 (>= 13.1) [riscv64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 14) [arm64]

  dep: libstdc++6 (>= 5.2) [arm64, riscv64 değil]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

kraken indir

Tüm mevcut mimariler için indir

Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
alpha (resmi olmayan port)	1.1.1-4	736,2 kB	1.773,0 kB	[dosya listesi]
amd64	1.1.1-4	734,8 kB	1.531,0 kB	[dosya listesi]
arm64	1.1.1-4+b1	729,5 kB	1.708,0 kB	[dosya listesi]
hppa (resmi olmayan port)	1.1.1-4	739,1 kB	1.530,0 kB	[dosya listesi]
ia64 (resmi olmayan port)	1.1.1-4	749,9 kB	1.700,0 kB	[dosya listesi]
m68k (resmi olmayan port)	0.10.5~beta-4	721,8 kB	1.440,0 kB	[dosya listesi]
mips64el	1.1.1-4	736,3 kB	1.789,0 kB	[dosya listesi]
ppc64 (resmi olmayan port)	1.1.1-4	736,9 kB	1.771,0 kB	[dosya listesi]
ppc64el	1.1.1-4	735,8 kB	1.771,0 kB	[dosya listesi]
riscv64	1.1.1-4+b1	734,2 kB	1.460,0 kB	[dosya listesi]
sh4 (resmi olmayan port)	0.10.5~beta-4	729,3 kB	1.416,0 kB	[dosya listesi]
sparc64 (resmi olmayan port)	1.1.1-4	728,4 kB	7.416,0 kB	[dosya listesi]
x32 (resmi olmayan port)	1.1.1-4	734,8 kB	1.497,0 kB	[dosya listesi]