Paket: hinge (0.5.0-7 ve diğerleri)

[ Kaynak: hinge  ]

long read genome assembler based on hinging

HINGE is a genome assembler that seeks to achieve optimal repeat resolution by distinguishing repeats that can be resolved given the data from those that cannot. This is accomplished by adding “hinges” to reads for constructing an overlap graph where only unresolvable repeats are merged. As a result, HINGE combines the error resilience of overlap-based assemblers with repeat-resolution capabilities of de Bruijn graph assemblers.

hinge ile İlgili Diğer Paketler

• dep: daligner

  local alignment discovery between long nucleotide sequencing reads

• dep: dascrubber

  alignment-based scrubbing pipeline for DNA sequencing reads

• dep: dazzdb

  manage nucleotide sequencing read data

• dep: libc6 (>= 2.11) [hppa]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

  dep: libc6 (>= 2.27) [x32]

  dep: libc6 (>= 2.38) [alpha, hppa, loong64, ppc64, sparc64, x32 değil]

  dep: libc6 (>= 2.40) [loong64]

  dep: libc6 (>= 2.7) [ppc64, sparc64]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6.1-udeb

• dep: libfmt10 (>= 10.1.1+ds1) [alpha, hppa, ppc64, sparc64, x32 değil]

  fast type-safe C++ formatting library -- library

• dep: libfmt9 (>= 9.1.0+ds1) [alpha]

  fast type-safe C++ formatting library -- library

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, loong64, mips64el, ppc64el, x32]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 7) [i386]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc1 (>= 1:3.0) [ppc64]

  Paket mevcut değil

  dep: libgcc1 (>= 1:3.4) [sparc64]

• dep: libgcc4 (>= 4.1.1) [hppa]

  Paket mevcut değil

• dep: libgomp1 (>= 4.2.1)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 13.1) [hppa, ppc64, sparc64, x32 değil]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 5.2) [hppa, ppc64, sparc64]

  dep: libstdc++6 (>= 9) [x32]

• dep: python [hppa, ppc64, sparc64]

  Paket mevcut değil

• dep: python-colormap [hppa, ppc64, sparc64]

  Paket mevcut değil

• dep: python-configparser [hppa, ppc64, sparc64]

  Paket mevcut değil

• dep: python-matplotlib [hppa, ppc64, sparc64]

  Paket mevcut değil

• dep: python-networkx [hppa, ppc64, sparc64]

  Paket mevcut değil

• dep: python-numpy [hppa, ppc64, sparc64]

  Paket mevcut değil

• dep: python-pbcore [hppa, ppc64, sparc64]

  sanal paketi sağlayan python3-pbcore

• dep: python-ujson [hppa, ppc64, sparc64]

  Paket mevcut değil

• dep: python3 [hppa, ppc64, sparc64 değil]

  interactive high-level object-oriented language (default python3 version)

• dep: python3-colormap [hppa, ppc64, sparc64 değil]

  ease manipulation of matplotlib colormaps and color codecs (Python 3)

• dep: python3-matplotlib [hppa, ppc64, sparc64 değil]

  Python based plotting system in a style similar to Matlab

• dep: python3-networkx [hppa, ppc64, sparc64 değil]

  tool to create, manipulate and study complex networks (Python3)

• dep: python3-numpy [hppa, ppc64, sparc64 değil]

  Python library for numerical computations (Python 3)

• dep: python3-pbcore [hppa, ppc64, sparc64 değil]

  Python 3 library for processing PacBio data files

• dep: python3-ujson [hppa, ppc64, sparc64 değil]

  ultra fast JSON encoder and decoder for Python 3

• dep: zlib1g (>= 1:1.1.4) [armel, armhf, m68k değil]

  compression library - runtime

  dep: zlib1g (>= 1:1.2.3.3) [armel, armhf, m68k]

hinge indir

Tüm mevcut mimariler için indir

Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
alpha (resmi olmayan port)	0.5.0-7	478,9 kB	3.840,0 kB	[dosya listesi]
amd64	0.5.0-7+b3	466,2 kB	3.096,0 kB	[dosya listesi]
arm64	0.5.0-7+b3	417,0 kB	3.124,0 kB	[dosya listesi]
armel	0.5.0-7+b2	399,4 kB	2.775,0 kB	[dosya listesi]
armhf	0.5.0-7+b3	405,5 kB	2.351,0 kB	[dosya listesi]
hppa (resmi olmayan port)	0.5.0-2	366,1 kB	2.439,0 kB	[dosya listesi]
i386	0.5.0-7+b3	459,8 kB	3.215,0 kB	[dosya listesi]
loong64 (resmi olmayan port)	0.5.0-7+b1	432,5 kB	3.124,0 kB	[dosya listesi]
m68k (resmi olmayan port)	0.5.0-7+b2	409,4 kB	2.911,0 kB	[dosya listesi]
mips64el	0.5.0-7+b2	395,8 kB	3.429,0 kB	[dosya listesi]
ppc64 (resmi olmayan port)	0.5.0-2	367,3 kB	3.140,0 kB	[dosya listesi]
ppc64el	0.5.0-7+b2	443,2 kB	3.572,0 kB	[dosya listesi]
riscv64	0.5.0-7+b2	453,3 kB	2.492,0 kB	[dosya listesi]
sparc64 (resmi olmayan port)	0.5.0-2	328,1 kB	2.445,0 kB	[dosya listesi]
x32 (resmi olmayan port)	0.5.0-6	530,1 kB	3.850,0 kB	[dosya listesi]