Paket: tiddit (2.12.0+dfsg-3 ve diğerleri)

[ Kaynak: tiddit  ]

structural variant calling

TIDDIT is a tool to used to identify chromosomal rearrangements using Mate Pair or Paired End sequencing data. TIDDIT identifies intra and inter- chromosomal translocations, deletions, tandem-duplications and inversions, using supplementary alignments as well as discordant pairs.

TIDDIT has two analysis modules. The sv mode, which is used to search for structural variants. And the cov mode that analyse the read depth of a bam file and generates a coverage report.

tiddit ile İlgili Diğer Paketler

• dep: libbamtools2.5.1 (>= 2.5.1+dfsg)

  dynamic library for manipulating BAM (genome alignment) files

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.4) [amd64, arm64, ppc64el değil]

• dep: libgcc-s1 (>= 3.0) [armel, armhf, i386, mipsel değil]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel]

• dep: libstdc++6 (>= 5.2) [armel, armhf]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 9) [armel, armhf değil]

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.10)

  dep: python3 (>= 3.9~)

tiddit indir

Tüm mevcut mimariler için indir

Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	2.12.0+dfsg-3+b1	245,1 kB	1.040,0 kB	[dosya listesi]
arm64	2.12.0+dfsg-3+b1	206,7 kB	835,0 kB	[dosya listesi]
armel	2.12.0+dfsg-3+b1	207,0 kB	810,0 kB	[dosya listesi]
armhf	2.12.0+dfsg-3+b1	213,0 kB	578,0 kB	[dosya listesi]
i386	2.12.0+dfsg-3+b1	239,5 kB	1.019,0 kB	[dosya listesi]
mips64el	2.12.0+dfsg-3+b1	199,4 kB	928,0 kB	[dosya listesi]
mipsel	2.12.0+dfsg-3+b1	203,4 kB	888,0 kB	[dosya listesi]
ppc64el	2.12.0+dfsg-3+b1	228,0 kB	1.168,0 kB	[dosya listesi]
s390x	2.12.0+dfsg-3+b1	200,7 kB	951,0 kB	[dosya listesi]