Paket: sumatra (1.0.36+ds-2)

[ Kaynak: sumatra  ]

fast and exact comparison and clustering of sequences

With the development of next-generation sequencing, efficient tools are needed to handle millions of sequences in reasonable amounts of time. Sumatra is a program developed by the LECA. Sumatra aims to compare sequences in a way that is fast and exact at the same time. This tool has been developed to be adapted to the type of data generated by DNA metabarcoding, i.e. entirely sequenced, short markers. Sumatra computes the pairwise alignment scores from one dataset or between two datasets, with the possibility to specify a similarity threshold under which pairs of sequences that have a lower similarity are not reported. The output can then go through a classification process with programs such as MCL or MOTHUR.

sumatra ile İlgili Diğer Paketler

• dep: libc6 (>= 2.17) [arm64, ppc64el]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

  dep: libc6 (>= 2.7) [arm64, ppc64el değil]

• dep: libsuma1 (>= 1.0.35)

  shared library for sumatra and sumaclust

sumatra indir

Tüm mevcut mimariler için indir

Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	78,5 kB	136,0 kB	[dosya listesi]
arm64	77,8 kB	175,0 kB	[dosya listesi]
armel	78,9 kB	175,0 kB	[dosya listesi]
armhf	78,0 kB	175,0 kB	[dosya listesi]
i386	78,6 kB	135,0 kB	[dosya listesi]
mips64el	78,1 kB	176,0 kB	[dosya listesi]
mipsel	78,3 kB	176,0 kB	[dosya listesi]
ppc64el	79,0 kB	176,0 kB	[dosya listesi]
s390x	78,1 kB	131,0 kB	[dosya listesi]