Paketti: sumatra (1.0.36+ds-2)

[ Source: sumatra  ]

fast and exact comparison and clustering of sequences

With the development of next-generation sequencing, efficient tools are needed to handle millions of sequences in reasonable amounts of time. Sumatra is a program developed by the LECA. Sumatra aims to compare sequences in a way that is fast and exact at the same time. This tool has been developed to be adapted to the type of data generated by DNA metabarcoding, i.e. entirely sequenced, short markers. Sumatra computes the pairwise alignment scores from one dataset or between two datasets, with the possibility to specify a similarity threshold under which pairs of sequences that have a lower similarity are not reported. The output can then go through a classification process with programs such as MCL or MOTHUR.

Muut pakettiin sumatra liittyvät paketit

• dep: libc6 (>= 2.17) [arm64, ppc64el]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

  dep: libc6 (>= 2.7) [ei arm64, ppc64el]

• dep: libsuma1 (>= 1.0.35)

  shared library for sumatra and sumaclust

Imuroi sumatra

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	78.5 kt	136.0 kt	[tiedostoluettelo]
arm64	77.8 kt	175.0 kt	[tiedostoluettelo]
armel	78.9 kt	175.0 kt	[tiedostoluettelo]
armhf	78.0 kt	175.0 kt	[tiedostoluettelo]
i386	78.6 kt	135.0 kt	[tiedostoluettelo]
mips64el	78.1 kt	176.0 kt	[tiedostoluettelo]
mipsel	78.3 kt	176.0 kt	[tiedostoluettelo]
ppc64el	79.0 kt	176.0 kt	[tiedostoluettelo]
s390x	78.1 kt	131.0 kt	[tiedostoluettelo]