Balík: t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 a iné)

[ Zdroj: t-coffee  ]

Multiple Sequence Alignment

T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Version 2.00 and higher can mix sequences and structures.

T-Coffee allows the combination of a collection of multiple/pairwise, global or local alignments into a single model. It can also estimate the level of consistency of each position within the new alignment with the rest of the alignments. See the pre-print for more information

T-Coffee has a special called M-Coffee that makes it possible to combine the output of many multiple sequence alignment packages. In its published version, it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and T-Coffee. A special version has been made for Debian, DM-Coffee, that uses only free software by replacing Clustal W by Kalign. Using the 8 Methods of M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite methods if you prefer.

Značky: Pole: Biológia, Bioinformatika, Implementované v: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Need an extra tag, works-with-format::plaintext, works-with::TODO

Ostatné balíky súvisiace s balíkom t-coffee

• dep: libc6 (>= 2.34) [nie alpha, arm64, ia64, sh4]

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

  dep: libc6 (>= 2.36) [sh4]

  dep: libc6 (>= 2.38) [arm64]

• dep: libc6.1 (>= 2.33) [alpha]

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6.1-udeb

  dep: libc6.1 (>= 2.36) [ia64]

• dep: libgcc-s1 (>= 3.0) [nie armel, armhf, hppa, ia64, m68k, ppc64, ppc64el, sh4]

  podporná knižnica GCC

  dep: libgcc-s1 (>= 3.3.4) [sh4]

  dep: libgcc-s1 (>= 3.4.4) [ppc64, ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  podporná knižnica GCC

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  podporná knižnica GCC

• dep: libstdc++6 (>= 13.1) [arm64, riscv64]

  štandardná knižnica C++ GNU v3

  dep: libstdc++6 (>= 4.1.1) [nie arm64, riscv64]

• dep: libunwind8 [ia64]

  nnižnica na určenie na určenie postupnosti volania programu - dynamické súbory

• rec: amap-align

  Protein multiple alignment by sequence annealing

• rec: clustalo

  General-purpose multiple sequence alignment program for proteins

• rec: clustalw

  globálne viacnásobné zarovnávanie sekvencií nukleotidov alebo peptidov

• rec: dialign-tx

  Segment-based multiple sequence alignment

• rec: fsa

  Fast Statistical Alignment of protein, RNA or DNA sequences

• rec: kalign

  Global and progressive multiple sequence alignment

• rec: libsoap-lite-perl

  implementácia klienta a servera SOAP v jazyku Perl

• rec: libxml-simple-perl

  modul jazyka Perl na čítanie a zápis XML

• rec: mafft

  Multiple alignment program for amino acid or nucleotide sequences

• rec: muscle

  Multiple alignment program of protein sequences

• rec: mustang

  multiple structural alignment of proteins

• rec: ncbi-blast+

  next generation suite of BLAST sequence search tools

• rec: poa

  Partial Order Alignment for multiple sequence alignment

• rec: prank

  Probabilistic Alignment Kit for DNA, codon and amino-acid sequences

• rec: probcons

  PROBabilistic CONSistency-based multiple sequence alignment

• rec: proda

  viacnásobné zarovnanie proteínových sekvencií

• rec: tm-align

  structural alignment of proteins

• sug: boxshade

  Pretty-printing of multiple sequence alignments

• sug: seaview

  Multiplatform interface for sequence alignment and phylogeny

• sug: t-coffee-examples

  annotated examples for the use of T-Coffee

Stiahnuť t-coffee

Stiahnuť pre všetky dostupné architektúry

Architektúra	Verzia	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
alpha (neoficiálny port)	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	997.0 kB	3,340.0 kB	[zoznam súborov]
amd64	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	1,007.5 kB	2,715.0 kB	[zoznam súborov]
arm64	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1+b1	914.7 kB	2,699.0 kB	[zoznam súborov]
armel	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	846.5 kB	2,569.0 kB	[zoznam súborov]
armhf	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	857.3 kB	1,929.0 kB	[zoznam súborov]
hppa (neoficiálny port)	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	910.9 kB	2,720.0 kB	[zoznam súborov]
i386	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	1,010.5 kB	3,033.0 kB	[zoznam súborov]
ia64 (neoficiálny port)	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	1,208.2 kB	5,405.0 kB	[zoznam súborov]
m68k (neoficiálny port)	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	893.9 kB	2,825.0 kB	[zoznam súborov]
mips64el	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	950.6 kB	3,380.0 kB	[zoznam súborov]
ppc64 (neoficiálny port)	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	1,020.1 kB	3,466.0 kB	[zoznam súborov]
ppc64el	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	1,063.4 kB	3,402.0 kB	[zoznam súborov]
riscv64	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1+b1	996.7 kB	2,295.0 kB	[zoznam súborov]
s390x	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	921.2 kB	2,974.0 kB	[zoznam súborov]
sh4 (neoficiálny port)	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	1,073.0 kB	2,570.0 kB	[zoznam súborov]
sparc64 (neoficiálny port)	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	835.5 kB	3,150.0 kB	[zoznam súborov]
x32 (neoficiálny port)	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	1,010.6 kB	2,710.0 kB	[zoznam súborov]