Pakket: tvc (5.0.3+git20151221.80e144e+dfsg-5 en anderen)

[ Bron: tvc  ]

genetic variant caller for Ion Torrent sequencing platforms

Torrent Variant Caller (TVC) is a genetic variant caller for Ion Torrent sequencing platforms, and is specially optimized to exploit the underlying flow signal information in the statistical model to evaluate variants. Torrent Variant Caller is designed to call single-nucleotide polymorphisms (SNPs), multi-nucleotide polymorphisms (MNPs), insertions, deletions, and block substitutions.

Andere aan tvc gerelateerde pakketten

• dep: libarmadillo12 (>= 1:12.6.1+dfsg) [ia64]

  streamlined C++ linear algebra library

• dep: libarmadillo14 (>= 1:14.0.1+dfsg) [niet ia64]

  streamlined C++ linear algebra library

• dep: libbamtools2.5.2 (>= 2.5.2+dfsg)

  dynamic library for manipulating BAM (genome alignment) files

• dep: libblas3 [sparc64]

  Basic Linear Algebra Reference implementations, shared library

  of libblas.so.3

  virtueel pakket geboden door libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.38) [niet alpha, ia64, sh4]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.40) [sh4]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.38) [alpha]

• dep: libdisorder0 (>= 0.0.2)

  library for entropy measurement of byte streams

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, i386, mips64el, s390x, x32]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]

  dep: libgcc-s1 (>= 3.4.4) [ppc64, ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support bibliotheek

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libjsoncpp25 (>= 1.9.5) [ia64]

  library for reading and writing JSON for C++

• dep: libjsoncpp26 (>= 1.9.6) [niet ia64]

  library for reading and writing JSON for C++

• dep: liblapack3 [sparc64]

  Library of linear algebra routines 3 - shared version

  of liblapack.so.3

  virtueel pakket geboden door libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libsmithwaterman0 (>= 0.0+git20160702.2610e25)

  determine similar regions between two strings or genomic sequences (lib)

• dep: libstdc++6 (>= 13.1) [niet alpha]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 14.2.0-2) [alpha]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: python3

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• dep: zlib1g (>= 1:1.1.4)

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tvc downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	5.0.3+git20151221.80e144e+dfsg-5+b3	1.037,8 kB	3.734,0 kB	[overzicht]
amd64	5.0.3+git20151221.80e144e+dfsg-5+b3	1.088,5 kB	3.505,0 kB	[overzicht]
arm64	5.0.3+git20151221.80e144e+dfsg-5+b3	992,7 kB	3.349,0 kB	[overzicht]
armel	5.0.3+git20151221.80e144e+dfsg-5+b3	963,5 kB	3.177,0 kB	[overzicht]
armhf	5.0.3+git20151221.80e144e+dfsg-5+b3	977,4 kB	2.697,0 kB	[overzicht]
hppa (unofficial port)	5.0.3+git20151221.80e144e+dfsg-5+b3	1.016,8 kB	3.219,0 kB	[overzicht]
i386	5.0.3+git20151221.80e144e+dfsg-5+b3	1.117,9 kB	3.544,0 kB	[overzicht]
ia64 (unofficial port)	5.0.3+git20151221.80e144e+dfsg-5+b1	1.176,5 kB	5.139,0 kB	[overzicht]
m68k (unofficial port)	5.0.3+git20151221.80e144e+dfsg-5+b3	952,2 kB	3.208,0 kB	[overzicht]
mips64el	5.0.3+git20151221.80e144e+dfsg-5+b3	1.003,8 kB	3.751,0 kB	[overzicht]
ppc64 (unofficial port)	5.0.3+git20151221.80e144e+dfsg-5+b3	1.056,5 kB	3.870,0 kB	[overzicht]
ppc64el	5.0.3+git20151221.80e144e+dfsg-5+b3	1.067,7 kB	3.732,0 kB	[overzicht]
riscv64	5.0.3+git20151221.80e144e+dfsg-5+b3	1.048,0 kB	2.913,0 kB	[overzicht]
s390x	5.0.3+git20151221.80e144e+dfsg-5+b3	1.061,0 kB	3.520,0 kB	[overzicht]
sh4 (unofficial port)	5.0.3+git20151221.80e144e+dfsg-5+b3	1.061,5 kB	3.088,0 kB	[overzicht]
sparc64 (unofficial port)	5.0.3+git20151221.80e144e+dfsg-5+b3	959,0 kB	5.541,0 kB	[overzicht]
x32 (unofficial port)	5.0.3+git20151221.80e144e+dfsg-5+b3	1.077,6 kB	3.379,0 kB	[overzicht]