Pakket: r-cran-sctransform (0.3.2-1)

[ Bron: r-cran-sctransform  ]

Variance Stabilizing Transformations for Single Cell UMI Data

A normalization method for single-cell UMI count data using a variance stabilizing transformation. The transformation is based on a negative binomial regression model with regularized parameters. As part of the same regression framework, this package also provides functions for batch correction, and data correction. See Hafemeister and Satija 2019 <doi:10.1101/576827> for more details.

Andere aan r-cran-sctransform gerelateerde pakketten

• dep: libblas3

  Basic Linear Algebra Reference implementations, shared library

  of libblas.so.3

  virtueel pakket geboden door libatlas3-base, libblas3, libblis3-openmp, libblis3-pthread, libblis3-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.29)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf, ppc64el]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

  of liblapack.so.3

  virtueel pakket geboden door libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libstdc++6 (>= 5.2) [armel, armhf]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 9) [niet armel, armhf]

• dep: r-api-4.0

  virtueel pakket geboden door r-base-core

• dep: r-base-core (>= 4.0.3-1)

  GNU R core of statistical computation and graphics system

• dep: r-cran-future

  R package: A Future API for R

• dep: r-cran-future.apply

  apply function to elements in parallel using futures

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-gridextra

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• dep: r-cran-mass

  GNU R package of Venables and Ripley's MASS

• dep: r-cran-matrix

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• dep: r-cran-matrixstats

  GNU R methods that apply to rows and columns of a matrix

• dep: r-cran-rcpp (>= 0.11.0)

  GNU R package for Seamless R and C++ Integration

• dep: r-cran-rcpparmadillo

  GNU R package for Armadillo C++ linear algebra library

• dep: r-cran-reshape2

  Flexibly reshape data: a reboot of the reshape package

• rec: r-cran-testthat

  GNU R testsuite

• sug: r-cran-irlba

  GNU R fast truncated SVD, PCA and symmetric eigendecomposition

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

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Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	388,8 kB	587,0 kB	[overzicht]
arm64	377,8 kB	567,0 kB	[overzicht]
armel	380,9 kB	569,0 kB	[overzicht]
armhf	379,0 kB	509,0 kB	[overzicht]
i386	393,0 kB	589,0 kB	[overzicht]
mips64el	377,2 kB	613,0 kB	[overzicht]
mipsel	379,3 kB	605,0 kB	[overzicht]
ppc64el	387,1 kB	623,0 kB	[overzicht]
s390x	380,9 kB	591,0 kB	[overzicht]