Pakket: r-bioc-scuttle (1.14.0+dfsg-1 en anderen)

[ Bron: r-bioc-scuttle  ]

BioConductor single-cell RNA-Seq analysis utilities

Provides basic utility functions for performing single-cell analyses, focusing on simple normalization, quality control and data transformations. Also provides some helper functions to assist development of other packages.

Andere aan r-bioc-scuttle gerelateerde pakketten

• dep: libblas3 [sparc64]

  Basic Linear Algebra Reference implementations, shared library

  of libblas.so.3

  virtueel pakket geboden door libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.11) [mips64el, ppc64, s390x, sparc64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.14) [amd64]

  dep: libc6 (>= 2.16) [x32]

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.2) [hppa]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.11) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [niet alpha, hppa, ia64, riscv64, sh4, sparc64]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sparc64]

  dep: libgcc-s1 (>= 4.2) [sh4]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libgfortran5 (>= 8) [sparc64]

  Runtime library for GNU Fortran applications

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

  of liblapack.so.3

  virtueel pakket geboden door libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libstdc++6 (>= 11) [x32]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 13.1) [hppa, ia64, sh4]

  dep: libstdc++6 (>= 14) [niet hppa, ia64, sh4, x32]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: r-api-4.0

  virtueel pakket geboden door r-base-core

• dep: r-api-bioc-3.16 [x32]

  Pakket niet beschikbaar

• dep: r-api-bioc-3.18 [hppa, ia64, sh4]

  Pakket niet beschikbaar

• dep: r-api-bioc-3.19 [niet hppa, ia64, sh4, x32]

  virtueel pakket geboden door r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-2) [x32]

  GNU R core of statistical computation and graphics system

• dep: r-bioc-beachmat [hppa, ia64, sh4, x32]

  I/O for several formats storing matrix data

  dep: r-bioc-beachmat (>= 2.20.0) [niet hppa, ia64, sh4, x32]

• dep: r-bioc-biocgenerics [hppa, ia64, sh4, x32]

  generic functions for Bioconductor

  dep: r-bioc-biocgenerics (>= 0.50.0) [niet hppa, ia64, sh4, x32]

• dep: r-bioc-biocparallel [hppa, ia64, sh4, x32]

  BioConductor facilities for parallel evaluation

  dep: r-bioc-biocparallel (>= 1.38.0) [niet hppa, ia64, sh4, x32]

• dep: r-bioc-delayedarray [hppa, ia64, sh4, x32]

  BioConductor delayed operations on array-like objects

  dep: r-bioc-delayedarray (>= 0.30.1) [niet hppa, ia64, sh4, x32]

• dep: r-bioc-delayedmatrixstats [hppa, ia64, sh4, x32]

  Functions on Rows and Columns of 'DelayedMatrix' Objects

  dep: r-bioc-delayedmatrixstats (>= 1.26.0) [niet hppa, ia64, sh4, x32]

• dep: r-bioc-genomicranges [hppa, ia64, sh4, x32]

  BioConductor representation and manipulation of genomic intervals

  dep: r-bioc-genomicranges (>= 1.56.1) [niet hppa, ia64, sh4, x32]

• dep: r-bioc-s4vectors [hppa, ia64, sh4, x32]

  BioConductor S4 implementation of vectors and lists

  dep: r-bioc-s4vectors (>= 0.42.1) [niet hppa, ia64, sh4, x32]

• dep: r-bioc-singlecellexperiment [hppa, ia64, sh4, x32]

  S4 Classes for Single Cell Data

  dep: r-bioc-singlecellexperiment (>= 1.26.0) [niet hppa, ia64, sh4, x32]

• dep: r-bioc-summarizedexperiment [hppa, ia64, sh4, x32]

  BioConductor assay container

  dep: r-bioc-summarizedexperiment (>= 1.34.0) [niet hppa, ia64, sh4, x32]

• dep: r-cran-matrix

  GNU R package of classes for dense and sparse matrices

• dep: r-cran-rcpp

  GNU R package for Seamless R and C++ Integration

• sug: r-bioc-biocstyle [hppa, ia64, sh4, x32]

  standard styles for vignettes and other Bioconductor documents

  sug: r-bioc-biocstyle (>= 2.32.1) [niet hppa, ia64, sh4, x32]

• sug: r-bioc-scran [hppa, ia64, sh4, x32]

  BioConductor methods for single-cell RNA-Seq data analysis

  sug: r-bioc-scran (>= 1.32.0) [niet hppa, ia64, sh4, x32]

• sug: r-bioc-scrnaseq [hppa, ia64, sh4, x32]

  Collection of Public Single-Cell RNA-Seq Datasets

  sug: r-bioc-scrnaseq (>= 2.18.0) [niet hppa, ia64, sh4, x32]

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-testthat

  GNU R testsuite

r-bioc-scuttle downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	1.14.0+dfsg-1	424,3 kB	868,0 kB	[overzicht]
amd64	1.14.0+dfsg-1	434,3 kB	803,0 kB	[overzicht]
arm64	1.14.0+dfsg-1	419,7 kB	804,0 kB	[overzicht]
hppa (unofficial port)	1.12.0+dfsg-1	415,5 kB	830,0 kB	[overzicht]
ia64 (unofficial port)	1.12.0+dfsg-1	427,9 kB	1.043,0 kB	[overzicht]
mips64el	1.14.0+dfsg-1	417,6 kB	911,0 kB	[overzicht]
ppc64 (unofficial port)	1.14.0+dfsg-1	432,1 kB	935,0 kB	[overzicht]
ppc64el	1.14.0+dfsg-1	429,7 kB	867,0 kB	[overzicht]
riscv64	1.14.0+dfsg-1	430,6 kB	739,0 kB	[overzicht]
s390x	1.14.0+dfsg-1	434,0 kB	827,0 kB	[overzicht]
sh4 (unofficial port)	1.12.0+dfsg-1	428,1 kB	791,0 kB	[overzicht]
sparc64 (unofficial port)	1.14.0+dfsg-1	412,3 kB	1.514,0 kB	[overzicht]
x32 (unofficial port)	1.8.4+dfsg-1	409,7 kB	734,0 kB	[overzicht]