Pakket: r-bioc-scran (1.34.0+dfsg-3 en anderen)

[ Bron: r-bioc-scran  ]

BioConductor methods for single-cell RNA-Seq data analysis

Implements functions for low-level analyses of single-cell RNA-seq data. Methods are provided for normalization of cell-specific biases, assignment of cell cycle phase, detection of highly variable and significantly correlated genes, identification of marker genes, and other common tasks in routine single-cell analysis workflows.

Andere aan r-bioc-scran gerelateerde pakketten

• dep: libc6 (>= 2.27) [riscv64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.29) [niet alpha, ia64, riscv64, sh4]

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [niet alpha, hppa, ia64, riscv64, sh4, sparc64]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

  of liblapack.so.3

  virtueel pakket geboden door libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libstdc++6 (>= 11) [x32]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 13.1) [hppa, ia64, sh4]

  dep: libstdc++6 (>= 14) [niet hppa, ia64, sh4, x32]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: r-api-4.0

  virtueel pakket geboden door r-base-core

• dep: r-api-bioc-3.16 [x32]

  Pakket niet beschikbaar

• dep: r-api-bioc-3.18 [hppa, ia64, sh4]

  Pakket niet beschikbaar

• dep: r-api-bioc-3.20 [niet hppa, ia64, sh4, x32]

  virtueel pakket geboden door r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-2) [x32]

  GNU R core of statistical computation and graphics system

• dep: r-bioc-beachmat

  I/O for several formats storing matrix data

• dep: r-bioc-biocgenerics

  generic functions for Bioconductor

• dep: r-bioc-biocparallel

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biocsingular

  Singular Value Decomposition for Bioconductor Packages

• dep: r-bioc-bluster

  Clustering Algorithms for Bioconductor

• dep: r-bioc-delayedarray

  BioConductor delayed operations on array-like objects

• dep: r-bioc-delayedmatrixstats [hppa, ia64, sh4, x32]

  Functions on Rows and Columns of 'DelayedMatrix' Objects

• dep: r-bioc-edger

  Empirical analysis of digital gene expression data in R

• dep: r-bioc-limma

  linear models for microarray data

• dep: r-bioc-matrixgenerics [niet hppa, ia64, sh4, x32]

  S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects

• dep: r-bioc-metapod

  GNU R meta-analyses on P-Values of differential analyses

• dep: r-bioc-s4arrays [niet hppa, ia64, sh4, x32]

  foundation of array-like containers in Bioconductor

• dep: r-bioc-s4vectors

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-scuttle

  BioConductor single-cell RNA-Seq analysis utilities

• dep: r-bioc-singlecellexperiment

  S4 Classes for Single Cell Data

• dep: r-bioc-summarizedexperiment

  BioConductor assay container

• dep: r-cran-bh

  (Virtual) GNU R package to provide BH

• dep: r-cran-dqrng

  GNU R fast pseudo random number generators

• dep: r-cran-igraph

  GNU R network analysis and visualization

• dep: r-cran-matrix

  GNU R package of classes for dense and sparse matrices

• dep: r-cran-rcpp

  GNU R package for Seamless R and C++ Integration

• dep: r-cran-statmod

  GNU R package providing algorithms and functions for statistical modeling

• sug: r-bioc-biobase [hppa, ia64, sh4, x32]

  base functions for Bioconductor

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-delayedmatrixstats [niet hppa, ia64, sh4, x32]

  Functions on Rows and Columns of 'DelayedMatrix' Objects

• sug: r-bioc-deseq2

  R package for RNA-Seq Differential Expression Analysis

• sug: r-bioc-hdf5array

  HDF5 backend for DelayedArray objects

• sug: r-bioc-monocle [hppa, ia64, sh4, x32]

  clustering, differential expression, and trajectory analysis for RNA-Seq

• sug: r-bioc-residualmatrix

  Creating a DelayedMatrix of Regression Residuals

• sug: r-bioc-scaledmatrix

  creating a DelayedMatrix of scaled and centered values using GNU R

• sug: r-bioc-scater

  Single-Cell Analysis Toolkit for Gene Expression Data in R

• sug: r-bioc-scrnaseq

  Collection of Public Single-Cell RNA-Seq Datasets

• sug: r-cran-dynamictreecut

  Methods for Detection of Clusters in Hierarchical Clustering

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-pheatmap

  GNU R package to create pretty heatmaps

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-testthat

  GNU R testsuite

r-bioc-scran downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	1.34.0+dfsg-3	983,0 kB	1.492,0 kB	[overzicht]
amd64	1.34.0+dfsg-3	993,6 kB	1.409,0 kB	[overzicht]
arm64	1.34.0+dfsg-3	976,9 kB	1.429,0 kB	[overzicht]
hppa (unofficial port)	1.30.2+dfsg-1	968,1 kB	1.429,0 kB	[overzicht]
ia64 (unofficial port)	1.30.2+dfsg-1	985,8 kB	1.683,0 kB	[overzicht]
mips64el	1.34.0+dfsg-3	975,3 kB	1.533,0 kB	[overzicht]
ppc64 (unofficial port)	1.34.0+dfsg-3	990,5 kB	1.561,0 kB	[overzicht]
ppc64el	1.34.0+dfsg-3	989,6 kB	1.493,0 kB	[overzicht]
riscv64	1.34.0+dfsg-3	990,6 kB	1.336,0 kB	[overzicht]
s390x	1.34.0+dfsg-3	994,9 kB	1.436,0 kB	[overzicht]
sh4 (unofficial port)	1.30.2+dfsg-1	987,2 kB	1.410,0 kB	[overzicht]
sparc64 (unofficial port)	1.34.0+dfsg-3	968,5 kB	2.076,0 kB	[overzicht]
x32 (unofficial port)	1.26.2+dfsg-1	964,7 kB	1.342,0 kB	[overzicht]