Pakket: murasaki-mpi (1.68.6-12)

[ Bron: murasaki  ]

homology detection tool across multiple large genomes (MPI-version)

Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.

Murasaki is an anchor alignment software, which is

 * exteremely fast (17 CPU hours for whole Human x Mouse genome (with
   40 nodes: 52 wall minutes))
 * scalable (Arbitrarily parallelizable across multiple nodes using MPI.
   Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
 * unlimited pattern length
 * repeat tolerant
 * intelligent noise reduction

This package provides the MPI-enabled binary for murasaki. While this will speed up operation on multi-processor machines it will slow down on a single processor.

Andere aan murasaki-mpi gerelateerde pakketten

• dep: libboost-filesystem1.74.0 (>= 1.74.0)

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-iostreams1.74.0 (>= 1.74.0)

  Boost.Iostreams Library

• dep: libboost-regex1.74.0-icu67

  virtueel pakket geboden door libboost-regex1.74.0

• dep: libc6 (>= 2.29)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf, i386, mipsel]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel]

• dep: libopenmpi3 (>= 4.1.0)

  high performance message passing library -- shared library

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: murasaki-common

  homology detection tool across multiple large genomes (common files)

murasaki-mpi downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	626,2 kB	4.074,0 kB	[overzicht]
arm64	550,4 kB	3.706,0 kB	[overzicht]
armel	407,7 kB	2.488,0 kB	[overzicht]
armhf	419,1 kB	1.772,0 kB	[overzicht]
i386	640,9 kB	3.828,0 kB	[overzicht]
mips64el	593,2 kB	5.060,0 kB	[overzicht]
mipsel	583,0 kB	4.406,0 kB	[overzicht]
ppc64el	627,7 kB	5.202,0 kB	[overzicht]
s390x	557,9 kB	4.274,0 kB	[overzicht]