Pakket: mindthegap (2.3.0-4 en anderen)

[ Bron: mindthegap  ]

performs detection and assembly of DNA insertion variants in NGS read datasets

Designed to call insertions of any size, whether they are novel or duplicated, homozygous or heterozygous in the donor genome. It takes as input a set of reads and a reference genome. It outputs two sets of FASTA sequences: one is the set of breakpoints of detection insertion sites, the other is the set of assembled insertions for each breakpoint. MindTheGap can also be used as a genome assembly finishing tool. It can fill the gaps between a set of input contigs without any a priori on their relative order and orientation. It outputs the results in gfa file.

Andere aan mindthegap gerelateerde pakketten

• dep: libc6 (>= 2.38) [niet alpha, hppa, ia64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.8) [hppa]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.38) [alpha]

• dep: libgatbcore3 (>= 1.4.2+dfsg-7)

  dynamic library of the Genome Analysis Toolbox

• dep: libgcc-s1 (>= 3.0) [niet alpha, hppa, ia64, riscv64, sparc64]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sparc64]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libhdf5-103-1 [hppa]

  HDF5 C runtime files - serial version

• dep: libhdf5-103-1t64 [niet hppa]

  HDF5 C runtime files - serial version

• dep: libstdc++6 (>= 11) [hppa]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 13.1) [niet hppa]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

mindthegap downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	2.3.0-4	224,4 kB	1.052,0 kB	[overzicht]
amd64	2.3.0-4	246,8 kB	1.073,0 kB	[overzicht]
arm64	2.3.0-4	221,6 kB	1.049,0 kB	[overzicht]
hppa (unofficial port)	2.3.0-1	273,2 kB	1.000,0 kB	[overzicht]
ia64 (unofficial port)	2.3.0-3+b1	268,9 kB	1.671,0 kB	[overzicht]
mips64el	2.3.0-4	198,2 kB	1.169,0 kB	[overzicht]
ppc64 (unofficial port)	2.3.0-4	232,8 kB	1.241,0 kB	[overzicht]
ppc64el	2.3.0-4	238,5 kB	1.177,0 kB	[overzicht]
riscv64	2.3.0-4	238,0 kB	853,0 kB	[overzicht]
sparc64 (unofficial port)	2.3.0-4	199,0 kB	1.054,0 kB	[overzicht]
x32 (unofficial port)	2.3.0-4	250,3 kB	956,0 kB	[overzicht]