Pakket: mafft (7.407-2)

[ Bron: mafft  ]

Multiple alignment program for amino acid or nucleotide sequences

MAFFT is a multiple sequence alignment program which offers three accuracy-oriented methods:

 * L-INS-i (probably most accurate; recommended for <200 sequences;
   iterative refinement method incorporating local pairwise alignment
   information),
 * G-INS-i (suitable for sequences of similar lengths; recommended for
   <200 sequences; iterative refinement method incorporating global
   pairwise alignment information),
 * E-INS-i (suitable for sequences containing large unalignable regions;
   recommended for <200 sequences),

and five speed-oriented methods:

 * FFT-NS-i (iterative refinement method; two cycles only),
 * FFT-NS-i (iterative refinement method; max. 1000 iterations),
 * FFT-NS-2 (fast; progressive method),
 * FFT-NS-1 (very fast; recommended for >2000 sequences; progressive
   method with a rough guide tree),
 * NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive
   method with the PartTree algorithm).

Tags: Biology: Clustal/ALN, Proteins, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::comparing, works-with-format::plaintext, Works with: Biological Sequence

Andere aan mafft gerelateerde pakketten

• dep: libc6 (>= 2.14) [amd64]

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  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.7) [armhf, i386]

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• rec: blast2

  transitional dummy package to ncbi-blast+-legacy

• rec: libwww-perl

  simple and consistent interface to the world-wide web

• rec: lynx

  classic non-graphical (text-mode) web browser

• rec: ruby

  Interpreter of object-oriented scripting language Ruby (default version)

• enh: t-coffee

  Multiple Sequence Alignment

mafft downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	976,0 kB	10.852,0 kB	[overzicht]
arm64	852,7 kB	9.972,0 kB	[overzicht]
armhf	700,1 kB	7.144,0 kB	[overzicht]
i386	886,3 kB	11.784,0 kB	[overzicht]