Pakket: flye (2.9.5+dfsg-1 en anderen)

[ Bron: flye  ]

de novo assembler for single molecule sequencing reads using repeat graphs

Flye is a de novo assembler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The package represents a complete pipeline: it takes raw PacBio / ONT reads as input and outputs polished contigs. Flye also has a special mode for metagenome assembly.

Andere aan flye gerelateerde pakketten

• dep: libc6 (>= 2.38) [niet alpha, ia64, loong64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.40) [loong64]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.38) [alpha]

• dep: libgcc-s1 (>= 3.0) [niet alpha, ia64, riscv64]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libstdc++6 (>= 13.1) [ia64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 14) [niet ia64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: minimap2

  versatile pairwise aligner for genomic and spliced nucleotide sequences

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-six

  Python 2 and 3 compatibility library

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.1.4)

  compressiebibliotheek - programma's

flye downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	2.9.5+dfsg-1	22.610,8 kB	37.052,0 kB	[overzicht]
amd64	2.9.5+dfsg-1	22.656,8 kB	36.930,0 kB	[overzicht]
arm64	2.9.5+dfsg-1	22.576,4 kB	36.729,0 kB	[overzicht]
ia64 (unofficial port)	2.9.3+dfsg2-1	22.763,6 kB	38.428,0 kB	[overzicht]
loong64 (unofficial port)	2.9.5+dfsg-1	22.611,7 kB	36.809,0 kB	[overzicht]
mips64el	2.9.5+dfsg-1	22.574,7 kB	37.033,0 kB	[overzicht]
ppc64 (unofficial port)	2.9.5+dfsg-1	22.638,8 kB	37.177,0 kB	[overzicht]
ppc64el	2.9.5+dfsg-1	22.648,1 kB	37.113,0 kB	[overzicht]
riscv64	2.9.5+dfsg-1	22.636,1 kB	36.481,0 kB	[overzicht]
s390x	2.9.5+dfsg-1	22.685,9 kB	37.085,0 kB	[overzicht]