Package: flye (2.9.5+dfsg-1 and others)

[ Source: flye  ]

de novo assembler for single molecule sequencing reads using repeat graphs

Flye is a de novo assembler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The package represents a complete pipeline: it takes raw PacBio / ONT reads as input and outputs polished contigs. Flye also has a special mode for metagenome assembly.

Other Packages Related to flye

• dep: libc6 (>= 2.38) [not alpha, ia64, loong64]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.40) [loong64]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.38) [alpha]

• dep: libgcc-s1 (>= 3.0) [not alpha, ia64, riscv64]

  GCC támogató programkönyvtár

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libstdc++6 (>= 13.1) [ia64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 14) [not ia64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: minimap2

  versatile pairwise aligner for genomic and spliced nucleotide sequences

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-six

  Python 2 and 3 compatibility library

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.1.4)

  tömörítő könyvtár - futásidejű

Download flye

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	2.9.5+dfsg-1	22,610.8 kB	37,052.0 kB	[list of files]
amd64	2.9.5+dfsg-1	22,656.8 kB	36,930.0 kB	[list of files]
arm64	2.9.5+dfsg-1	22,576.4 kB	36,729.0 kB	[list of files]
ia64 (unofficial port)	2.9.3+dfsg2-1	22,763.6 kB	38,428.0 kB	[list of files]
loong64 (unofficial port)	2.9.5+dfsg-1	22,611.7 kB	36,809.0 kB	[list of files]
mips64el	2.9.5+dfsg-1	22,574.7 kB	37,033.0 kB	[list of files]
ppc64 (unofficial port)	2.9.5+dfsg-1	22,638.8 kB	37,177.0 kB	[list of files]
ppc64el	2.9.5+dfsg-1	22,648.1 kB	37,113.0 kB	[list of files]
riscv64	2.9.5+dfsg-1	22,636.1 kB	36,481.0 kB	[list of files]
s390x	2.9.5+dfsg-1	22,685.9 kB	37,085.0 kB	[list of files]