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Pakket: daligner (1.0+git20240119.335105d-3 en anderen)

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local alignment discovery between long nucleotide sequencing reads

These tools permit one to find all significant local alignments between reads encoded in a Dazzler database. The assumption is that the reads are from a Pacific Biosciences RS II long read sequencer. That is, the reads are long and noisy, up to 15% on average.

Tags: Implemented in: C, User Interface: Command Line, Role: Program

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Pakket downloaden voor alle beschikbare platforms
Platform Versie Pakketgrootte Geïnstalleerde grootte Bestanden
alpha (unofficial port) 1.0+git20240119.335105d-3 213,8 kB1.994,0 kB [overzicht]
amd64 1.0+git20240119.335105d-3 236,0 kB1.626,0 kB [overzicht]
arm64 1.0+git20240119.335105d-3+b1 208,1 kB1.931,0 kB [overzicht]
armel 1.0+git20240119.335105d-3 198,3 kB1.520,0 kB [overzicht]
armhf 1.0+git20240119.335105d-3 198,1 kB1.128,0 kB [overzicht]
hppa (unofficial port) 1.0+git20240119.335105d-3 213,7 kB1.554,0 kB [overzicht]
i386 1.0+git20240119.335105d-3 227,6 kB1.756,0 kB [overzicht]
ia64 (unofficial port) 1.0+git20240119.335105d-2 252,4 kB2.877,0 kB [overzicht]
m68k (unofficial port) 1.0+git20240119.335105d-3 201,1 kB1.472,0 kB [overzicht]
mips64el 1.0+git20240119.335105d-3 195,5 kB2.039,0 kB [overzicht]
ppc64 (unofficial port) 1.0+git20240119.335105d-3 219,7 kB2.250,0 kB [overzicht]
ppc64el 1.0+git20240119.335105d-3 231,4 kB2.186,0 kB [overzicht]
riscv64 1.0+git20240119.335105d-3 226,8 kB1.238,0 kB [overzicht]
s390x 1.0+git20240119.335105d-3 240,3 kB1.788,0 kB [overzicht]
sh4 (unofficial port) 1.0+git20240119.335105d-3 228,8 kB1.664,0 kB [overzicht]
sparc64 (unofficial port) 1.0+git20240119.335105d-3 188,4 kB10.454,0 kB [overzicht]
x32 (unofficial port) 1.0+git20240119.335105d-3 234,2 kB1.556,0 kB [overzicht]