Package: daligner (1.0+git20240119.335105d-3 and others)

[ Source: daligner  ]

local alignment discovery between long nucleotide sequencing reads

These tools permit one to find all significant local alignments between reads encoded in a Dazzler database. The assumption is that the reads are from a Pacific Biosciences RS II long read sequencer. That is, the reads are long and noisy, up to 15% on average.

Tags: Implemented in: C, User Interface: Command Line, Role: Program

Other Packages Related to daligner

• dep: libc6 (>= 2.37) [sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.38) [not alpha, ia64, sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• sug: dascrubber

  alignment-based scrubbing pipeline for DNA sequencing reads

• sug: dazzdb

  manage nucleotide sequencing read data

Download daligner

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Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.0+git20240119.335105d-3	213.8 kB	1,994.0 kB	[list of files]
amd64	1.0+git20240119.335105d-3	236.0 kB	1,626.0 kB	[list of files]
arm64	1.0+git20240119.335105d-3+b1	208.1 kB	1,931.0 kB	[list of files]
armel	1.0+git20240119.335105d-3	198.3 kB	1,520.0 kB	[list of files]
armhf	1.0+git20240119.335105d-3	198.1 kB	1,128.0 kB	[list of files]
hppa (unofficial port)	1.0+git20240119.335105d-3	213.7 kB	1,554.0 kB	[list of files]
i386	1.0+git20240119.335105d-3	227.6 kB	1,756.0 kB	[list of files]
ia64 (unofficial port)	1.0+git20240119.335105d-2	252.4 kB	2,877.0 kB	[list of files]
loong64 (unofficial port)	1.0+git20240119.335105d-3	211.8 kB	1,560.0 kB	[list of files]
m68k (unofficial port)	1.0+git20240119.335105d-3	201.1 kB	1,472.0 kB	[list of files]
mips64el	1.0+git20240119.335105d-3	195.5 kB	2,039.0 kB	[list of files]
ppc64 (unofficial port)	1.0+git20240119.335105d-3	219.7 kB	2,250.0 kB	[list of files]
ppc64el	1.0+git20240119.335105d-3	231.4 kB	2,186.0 kB	[list of files]
riscv64	1.0+git20240119.335105d-3	226.8 kB	1,238.0 kB	[list of files]
s390x	1.0+git20240119.335105d-3	240.3 kB	1,788.0 kB	[list of files]
sh4 (unofficial port)	1.0+git20240119.335105d-3	228.8 kB	1,664.0 kB	[list of files]
sparc64 (unofficial port)	1.0+git20240119.335105d-3	188.4 kB	10,454.0 kB	[list of files]
x32 (unofficial port)	1.0+git20240119.335105d-3	234.2 kB	1,556.0 kB	[list of files]