Pakket: clonalframe (1.2-11 en anderen)

[ Bron: clonalframe  ]

inference of bacterial microevolution using multilocus sequence data

ClonalFrame identifies the clonal relationships between the members of a sample, while also estimating the chromosomal position of homologous recombination events that have disrupted the clonal inheritance.

ClonalFrame can be applied to any kind of sequence data, from a single fragment of DNA to whole genomes. It is well suited for the analysis of MLST data, where 7 gene fragments have been sequenced, but becomes progressively more powerful as the sequenced regions increase in length and number up to whole genomes. However, it requires the sequences to be aligned. If you have genomic data that is not aligned, it is recommend to use Mauve which produces alignment of whole bacterial genomes in exactly the format required for analysis with ClonalFrame.

Tags: Implemented in: C++, Role: Program

Andere aan clonalframe gerelateerde pakketten

• dep: libc6 (>= 2.37) [sh4]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.38) [niet alpha, ia64, sh4]

• dep: libc6.1 (>= 2.32) [ia64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.34) [alpha]

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf, hppa, ia64, m68k]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support bibliotheek

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libgsl27 (>= 2.7.1) [ia64]

  GNU Scientific Library (GSL) -- library package

• dep: libgsl28 (>= 2.8+dfsg) [niet ia64]

  GNU Scientific Library (GSL) -- library package

• dep: libgslcblas0 (>= 2.8) [sparc64]

  GNU Scientific Library (GSL) -- blas library package

• dep: libstdc++6 (>= 11) [ia64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 13.1) [niet ia64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• sug: clonalframeml

  Efficient Inference of Recombination in Whole Bacterial Genomes

clonalframe downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	1.2-11+b2	51,1 kB	152,0 kB	[overzicht]
amd64	1.2-11+b3	51,5 kB	143,0 kB	[overzicht]
arm64	1.2-11+b3	46,9 kB	151,0 kB	[overzicht]
armel	1.2-11+b3	43,9 kB	118,0 kB	[overzicht]
armhf	1.2-11+b3	42,1 kB	90,0 kB	[overzicht]
hppa (unofficial port)	1.2-11+b2	54,6 kB	149,0 kB	[overzicht]
i386	1.2-11+b3	54,3 kB	134,0 kB	[overzicht]
ia64 (unofficial port)	1.2-11+b1	68,7 kB	264,0 kB	[overzicht]
m68k (unofficial port)	1.2-11+b2	47,7 kB	126,0 kB	[overzicht]
mips64el	1.2-11+b3	54,9 kB	223,0 kB	[overzicht]
ppc64 (unofficial port)	1.2-11+b2	56,5 kB	215,0 kB	[overzicht]
ppc64el	1.2-11+b3	56,6 kB	215,0 kB	[overzicht]
riscv64	1.2-11+b2	51,1 kB	111,0 kB	[overzicht]
s390x	1.2-11+b3	53,9 kB	147,0 kB	[overzicht]
sh4 (unofficial port)	1.2-11+b2	56,5 kB	151,0 kB	[overzicht]
sparc64 (unofficial port)	1.2-11+b2	45,5 kB	1.050,0 kB	[overzicht]
x32 (unofficial port)	1.2-11+b2	50,9 kB	130,0 kB	[overzicht]