Pakket: porechop (0.2.4+dfsg-8)

[ Bron: porechop  ]

Experimenteel pakket

Warning: This package is from the experimental distribution. That means it is likely unstable or buggy, and it may even cause data loss. Please be sure to consult the changelog and other possible documentation before using it.

adapter trimmer for Oxford Nanopore reads

Porechop is a tool for finding and removing adapters from Oxford Nanopore reads. Adapters on the ends of reads are trimmed off, and when a read has an adapter in its middle, it is treated as chimeric and chopped into separate reads. Porechop performs thorough alignments to effectively find adapters, even at low sequence identity. Porechop also supports demultiplexing of Nanopore reads that were barcoded with the Native Barcoding Kit, PCR Barcoding Kit or Rapid Barcoding Kit.

Andere aan porechop gerelateerde pakketten

• dep: libc6 (>= 2.14) [amd64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.16) [x32]

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.2) [hppa]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.4) [niet amd64, arm64, hppa, ppc64el, riscv64, sh4, x32]

  dep: libc6 (>= 2.40) [sh4]

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf, hppa, m68k]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support bibliotheek

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (>= 3~)

porechop downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	56,4 kB	237,0 kB	[overzicht]
arm64	53,2 kB	225,0 kB	[overzicht]
armel	51,1 kB	217,0 kB	[overzicht]
armhf	51,3 kB	205,0 kB	[overzicht]
hppa (unofficial port)	55,6 kB	226,0 kB	[overzicht]
i386	57,4 kB	237,0 kB	[overzicht]
m68k (unofficial port)	53,1 kB	225,0 kB	[overzicht]
mips64el	53,9 kB	292,0 kB	[overzicht]
ppc64 (unofficial port)	57,6 kB	290,0 kB	[overzicht]
ppc64el	57,8 kB	289,0 kB	[overzicht]
riscv64	55,8 kB	213,0 kB	[overzicht]
s390x	56,9 kB	237,0 kB	[overzicht]
sh4 (unofficial port)	59,0 kB	225,0 kB	[overzicht]
sparc64 (unofficial port)	51,3 kB	1.187,0 kB	[overzicht]
x32 (unofficial port)	56,3 kB	233,0 kB	[overzicht]