Pakket: ngmlr (0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde en anderen)

[ Bron: ngmlr  ]

Experimenteel pakket

Warning: This package is from the experimental distribution. That means it is likely unstable or buggy, and it may even cause data loss. Please be sure to consult the changelog and other possible documentation before using it.

CoNvex Gap-cost alignMents for Long Reads

Ngmlr is a long-read mapper designed to sensitively align PacBilo or Oxford Nanopore to (large) reference genomes. It was designed to quickly and correctly align the reads, including those spanning (complex) structural variations. Ngmlr uses an SV aware k-mer search to find approximate mapping locations for a read and then a banded Smith- Waterman alignment algorithm to compute the final alignment. Ngmlr uses a convex gap cost model that penalizes gap extensions for longer gaps less than for shorter ones to compute precise alignments.

Andere aan ngmlr gerelateerde pakketten

• dep: libc6 (>= 2.34) [niet alpha, ia64, riscv64, sh4]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.36) [sh4]

  dep: libc6 (>= 2.38) [riscv64]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.36) [ia64]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64, ppc64el, s390x, x32]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sparc64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, ia64, sh4]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support bibliotheek

• dep: libssw0 (>= 1.1)

  fast SIMD parallelized implementation of the Smith-Waterman algorithm

• dep: libstdc++6 (>= 11) [niet riscv64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 13.1) [riscv64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: zlib1g (>= 1:1.1.4)

  compressiebibliotheek - programma's

ngmlr downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde	674,0 kB	1.303,0 kB	[overzicht]
amd64	0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde	673,6 kB	1.157,0 kB	[overzicht]
arm64	0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde	653,2 kB	1.173,0 kB	[overzicht]
armel	0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde	648,4 kB	1.112,0 kB	[overzicht]
armhf	0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde	649,1 kB	1.008,0 kB	[overzicht]
i386	0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde	680,5 kB	1.184,0 kB	[overzicht]
ia64 (unofficial port)	0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde	721,5 kB	1.631,0 kB	[overzicht]
m68k (unofficial port)	0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde	664,0 kB	1.180,0 kB	[overzicht]
mips64el	0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde	657,1 kB	1.260,0 kB	[overzicht]
ppc64 (unofficial port)	0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde	677,1 kB	1.301,0 kB	[overzicht]
ppc64el	0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde	677,3 kB	1.237,0 kB	[overzicht]
riscv64	0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde+b1	669,4 kB	1.078,0 kB	[overzicht]
s390x	0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde	654,8 kB	1.173,0 kB	[overzicht]
sh4 (unofficial port)	0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde	696,3 kB	1.173,0 kB	[overzicht]
sparc64 (unofficial port)	0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde	651,9 kB	1.753,0 kB	[overzicht]
x32 (unofficial port)	0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde	672,1 kB	1.136,0 kB	[overzicht]