Pakket: covtobed (1.3.5+dfsg-1 en anderen)

[ Bron: covtobed  ]

convert the coverage track from a BAM file into a BED file

Reads one (or more) alignment files (sorted BAM) and prints a BED with the coverage. It will join consecutive bases with the same coverage, and can be used to only print a BED file with the regions having a specific coverage range.

Andere aan covtobed gerelateerde pakketten

• dep: bamtools

  toolkit for manipulating BAM (genome alignment) files

• dep: libbamtools2.5.2 (>= 2.5.2+dfsg)

  dynamic library for manipulating BAM (genome alignment) files

• dep: libc6 (>= 2.34)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: zlib1g

  compressiebibliotheek - programma's

covtobed downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	1.3.5+dfsg-1+b1	48,8 kB	143,0 kB	[overzicht]
arm64	1.3.5+dfsg-1+b1	42,8 kB	147,0 kB	[overzicht]
armel	1.3.5+dfsg-1+b1	41,7 kB	146,0 kB	[overzicht]
armhf	1.3.5+dfsg-1+b1	43,1 kB	146,0 kB	[overzicht]
i386	1.3.5+dfsg-1+b1	51,5 kB	150,0 kB	[overzicht]
mips64el	1.3.5+dfsg-1+b1	45,5 kB	217,0 kB	[overzicht]
mipsel	1.3.5+dfsg-1+b1	45,2 kB	215,0 kB	[overzicht]
ppc64el	1.3.5+dfsg-1+b1	48,4 kB	211,0 kB	[overzicht]
s390x	1.3.5+dfsg-1+b1	42,4 kB	143,0 kB	[overzicht]