Package: covtobed (1.3.5+dfsg-1 and others)

[ Source: covtobed  ]

convert the coverage track from a BAM file into a BED file

Reads one (or more) alignment files (sorted BAM) and prints a BED with the coverage. It will join consecutive bases with the same coverage, and can be used to only print a BED file with the regions having a specific coverage range.

Other Packages Related to covtobed

• dep: bamtools

  toolkit for manipulating BAM (genome alignment) files

• dep: libbamtools2.5.2 (>= 2.5.2+dfsg)

  dynamic library for manipulating BAM (genome alignment) files

• dep: libc6 (>= 2.34)

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.0) [not armel, armhf]

  GCC támogató programkönyvtár

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: zlib1g

  tömörítő könyvtár - futásidejű

Download covtobed

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	1.3.5+dfsg-1+b1	48.8 kB	143.0 kB	[list of files]
arm64	1.3.5+dfsg-1+b1	42.8 kB	147.0 kB	[list of files]
armel	1.3.5+dfsg-1+b1	41.7 kB	146.0 kB	[list of files]
armhf	1.3.5+dfsg-1+b1	43.1 kB	146.0 kB	[list of files]
i386	1.3.5+dfsg-1+b1	51.5 kB	150.0 kB	[list of files]
mips64el	1.3.5+dfsg-1+b1	45.5 kB	217.0 kB	[list of files]
mipsel	1.3.5+dfsg-1+b1	45.2 kB	215.0 kB	[list of files]
ppc64el	1.3.5+dfsg-1+b1	48.4 kB	211.0 kB	[list of files]
s390x	1.3.5+dfsg-1+b1	42.4 kB	143.0 kB	[list of files]