Pakket: covtobed (1.3.5+dfsg-2 en anderen)

[ Bron: covtobed  ]

convert the coverage track from a BAM file into a BED file

Reads one (or more) alignment files (sorted BAM) and prints a BED with the coverage. It will join consecutive bases with the same coverage, and can be used to only print a BED file with the regions having a specific coverage range.

Andere aan covtobed gerelateerde pakketten

• dep: bamtools

  toolkit for manipulating BAM (genome alignment) files

• dep: libbamtools2.5.2 (>= 2.5.2+dfsg)

  dynamic library for manipulating BAM (genome alignment) files

• dep: libc6 (>= 2.34) [niet alpha, ia64, sh4]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf, hppa, ia64, m68k]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support bibliotheek

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: zlib1g

  compressiebibliotheek - programma's

covtobed downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	1.3.5+dfsg-2	45,8 kB	211,0 kB	[overzicht]
amd64	1.3.5+dfsg-2	49,8 kB	146,0 kB	[overzicht]
arm64	1.3.5+dfsg-2+b1	45,0 kB	147,0 kB	[overzicht]
armel	1.3.5+dfsg-2	42,8 kB	125,0 kB	[overzicht]
armhf	1.3.5+dfsg-2	44,6 kB	97,0 kB	[overzicht]
hppa (unofficial port)	1.3.5+dfsg-2	45,5 kB	123,0 kB	[overzicht]
i386	1.3.5+dfsg-2	53,4 kB	149,0 kB	[overzicht]
ia64 (unofficial port)	1.3.5+dfsg-2	57,1 kB	240,0 kB	[overzicht]
m68k (unofficial port)	1.3.5+dfsg-2	47,0 kB	137,0 kB	[overzicht]
mips64el	1.3.5+dfsg-2	46,4 kB	215,0 kB	[overzicht]
ppc64 (unofficial port)	1.3.5+dfsg-2	49,7 kB	210,0 kB	[overzicht]
ppc64el	1.3.5+dfsg-2	49,7 kB	210,0 kB	[overzicht]
riscv64	1.3.5+dfsg-2+b1	48,2 kB	111,0 kB	[overzicht]
s390x	1.3.5+dfsg-2	46,3 kB	138,0 kB	[overzicht]
sh4 (unofficial port)	1.3.5+dfsg-2	54,0 kB	145,0 kB	[overzicht]
sparc64 (unofficial port)	1.3.5+dfsg-2	39,5 kB	1.045,0 kB	[overzicht]
x32 (unofficial port)	1.3.5+dfsg-2	50,4 kB	133,0 kB	[overzicht]