Package: tantan (51-1 and others)

[ Source: tantan  ]

low complexity and tandem repeat masker for biosequences

tantan is a tool to mask simple regions (low complexity and short-period tandem repeats) in DNA, RNA, and protein sequences. The aim of tantan is to prevent false predictions when searching for homologous regions between two sequences. Simple repeats often align strongly to each other, causing false homology predictions.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, interface::commandline, Role: Program, Scope: scope::utility, works-with::biological-sequence

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  dep: libc6 (>= 2.40) [loong64, sh4]

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  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]

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• dep: libgcc-s4 (>= 4.1.1) [hppa]

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Download tantan

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	51-1	38.9 kB	145.0 kB	[list of files]
amd64	51-1	41.3 kB	120.0 kB	[list of files]
arm64	51-1	37.7 kB	144.0 kB	[list of files]
armel	51-1	36.9 kB	107.0 kB	[list of files]
armhf	51-1	34.9 kB	79.0 kB	[list of files]
hppa (unofficial port)	51-1	39.5 kB	104.0 kB	[list of files]
i386	51-1	44.5 kB	119.0 kB	[list of files]
ia64 (unofficial port)	49-2	51.1 kB	200.0 kB	[list of files]
loong64 (unofficial port)	51-1	38.7 kB	112.0 kB	[list of files]
m68k (unofficial port)	51-1	38.1 kB	111.0 kB	[list of files]
mips64el	51-1	41.2 kB	149.0 kB	[list of files]
ppc64 (unofficial port)	51-1	43.3 kB	144.0 kB	[list of files]
ppc64el	51-1	43.9 kB	144.0 kB	[list of files]
riscv64	51-1	40.1 kB	92.0 kB	[list of files]
s390x	51-1	44.5 kB	124.0 kB	[list of files]
sh4 (unofficial port)	51-1	47.7 kB	143.0 kB	[list of files]
sparc64 (unofficial port)	51-1	34.5 kB	1,042.0 kB	[list of files]
x32 (unofficial port)	51-1	41.7 kB	115.0 kB	[list of files]