Package: lumpy-sv (0.3.1+dfsg-7 and others)

[ Source: lumpy-sv  ]

general probabilistic framework for structural variant discovery

LUMPY, a novel SV discovery framework that naturally integrates multiple SV signals jointly across multiple samples. LUMPY yields improved sensitivity, especially when SV signal is reduced owing to either low coverage data or low intra-sample variant allele frequency.

Other Packages Related to lumpy-sv

• dep: bamkit

  tools for common BAM file manipulations

• dep: libbamtools2.4.0 [sparc64]

  Package not available

• dep: libbamtools2.5.1 (>= 2.5.1+dfsg) [hppa, ppc64]

  Package not available

• dep: libbamtools2.5.2 (>= 2.5.2+dfsg) [not hppa, ppc64, sparc64]

  dynamic library for manipulating BAM (genome alignment) files

• dep: libc6 (>= 2.29) [hppa, ppc64, sparc64]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.34) [amd64, armel, i386, m68k, mips64el, ppc64el, x32]

  dep: libc6 (>= 2.37) [loong64, sh4]

  dep: libc6 (>= 2.38) [arm64, armhf, riscv64]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libcurl4 (>= 7.16.2) [hppa, sparc64]

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, loong64, mips64el, ppc64, ppc64el, x32]

  GCC támogató programkönyvtár

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sparc64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, ia64, sh4]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC támogató programkönyvtár

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC támogató programkönyvtár

• dep: libgzstream0 (>= 1.5+dfsg) [not arm64, armhf, riscv64]

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  dep: libgzstream0 (>= 1.5+git20171107.9a20658) [arm64, armhf, riscv64]

• dep: libhts3 (>= 1.10) [hppa, ppc64, sparc64]

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• dep: libhts3t64 (>= 1.17) [not hppa, ppc64, sparc64]

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• dep: libssl1.1 (>= 1.1.0) [hppa, sparc64]

  Package not available

• dep: libstdc++6 (>= 13.1) [not hppa, ppc64, sparc64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 9) [hppa, ppc64, sparc64]

• dep: libunwind8 [ia64]

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• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-numpy

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• dep: python3-pysam

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• dep: samblaster

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• dep: samtools

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• dep: zlib1g (>= 1:1.1.4) [hppa, sparc64]

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• rec: sambamba

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Download lumpy-sv

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	0.3.1+dfsg-7+b1	185.1 kB	806.0 kB	[list of files]
amd64	0.3.1+dfsg-7+b1	205.3 kB	689.0 kB	[list of files]
arm64	0.3.1+dfsg-7+b2	171.9 kB	677.0 kB	[list of files]
armel	0.3.1+dfsg-7+b1	162.2 kB	567.0 kB	[list of files]
armhf	0.3.1+dfsg-7+b2	169.7 kB	547.0 kB	[list of files]
hppa (unofficial port)	0.3.1+dfsg-1	192.6 kB	673.0 kB	[list of files]
i386	0.3.1+dfsg-7+b1	221.6 kB	735.0 kB	[list of files]
ia64 (unofficial port)	0.3.1+dfsg-7+b1	238.6 kB	1,187.0 kB	[list of files]
loong64 (unofficial port)	0.3.1+dfsg-7+b1	172.1 kB	614.0 kB	[list of files]
m68k (unofficial port)	0.3.1+dfsg-7+b1	184.6 kB	627.0 kB	[list of files]
mips64el	0.3.1+dfsg-7+b1	175.8 kB	777.0 kB	[list of files]
ppc64 (unofficial port)	0.3.1+dfsg-1	182.5 kB	803.0 kB	[list of files]
ppc64el	0.3.1+dfsg-7+b1	194.5 kB	805.0 kB	[list of files]
riscv64	0.3.1+dfsg-7+b3	190.8 kB	529.0 kB	[list of files]
sh4 (unofficial port)	0.3.1+dfsg-7+b1	222.3 kB	676.0 kB	[list of files]
sparc64 (unofficial port)	0.3.1+dfsg-1	151.6 kB	584.0 kB	[list of files]
x32 (unofficial port)	0.3.1+dfsg-7+b1	211.4 kB	671.0 kB	[list of files]