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[ Source: srst2 ]

Paketti: srst2 (0.2.0-6)

Links for srst2

Debian-palvelut:

Imuroi lähdekoodipaketti srst2:

Ylläpitäjät:

External Resources:

Kotisivu [katholt.github.io]

Samankaltaisia paketteja:

Short Read Sequence Typing for Bacterial Pathogens

This program is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.

Muut pakettiin srst2 liittyvät paketit

depends

recommends

suggests

enhances

dep: bowtie2

ultrafast memory-efficient short read aligner
dep: cd-hit

suite of programs designed to quickly group sequences
dep: python

interactive high-level object-oriented language (Python2 version)
dep: python-biopython

Python library for bioinformatics (implemented in Python 2)
dep: python-scipy

scientific tools for Python
dep: samtools

processing sequence alignments in SAM, BAM and CRAM formats

rec: python-rpy2

Python 2 interface to the GNU R language and environment (version 2.8)

Imuroi srst2

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	59.3 kt	259.0 kt	[tiedostoluettelo]