Package: snpomatic (1.0-7 and others)

[ Source: snpomatic  ]

fast, stringent short-read mapping software

High throughput sequencing technologies generate large amounts of short reads. Mapping these to a reference sequence consumes large amounts of processing time and memory, and read mapping errors can lead to noisy or incorrect alignments.

SNP-o-matic is a fast, stringent short-read mapping software. It supports a multitude of output types and formats, for uses in filtering reads, alignments, sequence-based genotyping calls, assisted reassembly of contigs etc.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::comparing, works-with::biological-sequence

Other Packages Related to snpomatic

• dep: libc6 (>= 2.34) [not alpha, arm64, ia64, sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.37) [sh4]

  dep: libc6 (>= 2.38) [arm64]

• dep: libc6.1 (>= 2.30) [ia64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.34) [alpha]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, i386, mips64el, ppc64, ppc64el, s390x, x32]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libstdc++6 (>= 13.1) [not ia64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 5.2) [ia64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

Download snpomatic

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.0-7	76.0 kB	217.0 kB	[list of files]
amd64	1.0-7	83.6 kB	208.0 kB	[list of files]
arm64	1.0-7+b1	72.4 kB	217.0 kB	[list of files]
armel	1.0-7	66.4 kB	167.0 kB	[list of files]
armhf	1.0-7	67.5 kB	127.0 kB	[list of files]
hppa (unofficial port)	1.0-7	76.0 kB	180.0 kB	[list of files]
i386	1.0-7	85.9 kB	211.0 kB	[list of files]
ia64 (unofficial port)	1.0-5	106.7 kB	393.0 kB	[list of files]
m68k (unofficial port)	1.0-7	73.6 kB	183.0 kB	[list of files]
mips64el	1.0-7	74.8 kB	222.0 kB	[list of files]
ppc64 (unofficial port)	1.0-7	80.1 kB	280.0 kB	[list of files]
ppc64el	1.0-7	82.2 kB	216.0 kB	[list of files]
riscv64	1.0-7	77.9 kB	156.0 kB	[list of files]
s390x	1.0-7	79.3 kB	204.0 kB	[list of files]
sh4 (unofficial port)	1.0-7	90.2 kB	215.0 kB	[list of files]
sparc64 (unofficial port)	1.0-7	67.5 kB	1,050.0 kB	[list of files]
x32 (unofficial port)	1.0-7	83.3 kB	199.0 kB	[list of files]