Package: pizzly (0.37.3+ds-9 and others)

[ Source: pizzly  ]

Identifies gene fusions in RNA sequencing data

For the interpretation of the transcriptome (the abundance and sequence of RNA) of tomour cells one is particularly interested in transcripts that cannot be mapped to single genes but that are seen to be fused as parts from two genes. Likely eplanations are chromosomal translocations.

Pizzly can identify novel such peculiarities, building on interpretations on variable splicing by the tool kallisto. Both tools are elements of the bcbio workflow.

Other Packages Related to pizzly

• dep: kallisto

  near-optimal RNA-Seq quantification

• dep: libc6 (>= 2.34) [not alpha, arm64, ia64, sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.36) [sh4]

  dep: libc6 (>= 2.38) [arm64]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.36) [ia64]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64, ppc64el, s390x, x32]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4]

  dep: libgcc-s1 (>= 4.2) [ia64]

  dep: libgcc-s1 (>= 4.3) [sparc64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libstdc++6 (>= 12) [amd64, hppa, mips64el, ppc64, ppc64el, s390x, x32]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 12.2.0-12) [ia64, m68k, sparc64]

  dep: libstdc++6 (>= 12.2.0-9) [alpha, sh4]

  dep: libstdc++6 (>= 13.1) [arm64, riscv64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

• rec: python3-h5py

  general-purpose Python interface to hdf5

Download pizzly

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	0.37.3+ds-9	271.7 kB	1,059.0 kB	[list of files]
amd64	0.37.3+ds-9	285.5 kB	864.0 kB	[list of files]
arm64	0.37.3+ds-9+b1	262.0 kB	865.0 kB	[list of files]
hppa (unofficial port)	0.37.3+ds-9	268.7 kB	819.0 kB	[list of files]
ia64 (unofficial port)	0.37.3+ds-9	342.3 kB	1,558.0 kB	[list of files]
m68k (unofficial port)	0.37.3+ds-9	258.3 kB	815.0 kB	[list of files]
mips64el	0.37.3+ds-9	246.3 kB	962.0 kB	[list of files]
ppc64 (unofficial port)	0.37.3+ds-9	280.6 kB	1,056.0 kB	[list of files]
ppc64el	0.37.3+ds-9	285.1 kB	992.0 kB	[list of files]
riscv64	0.37.3+ds-9+b1	285.6 kB	725.0 kB	[list of files]
s390x	0.37.3+ds-9	249.8 kB	876.0 kB	[list of files]
sh4 (unofficial port)	0.37.3+ds-9	334.6 kB	864.0 kB	[list of files]
sparc64 (unofficial port)	0.37.3+ds-9	230.4 kB	1,062.0 kB	[list of files]
x32 (unofficial port)	0.37.3+ds-9	286.2 kB	815.0 kB	[list of files]